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646 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Third-party reanalysis
GSE95797	De novo assembly of Aedes aegypti using Hi-C yields chromosome-length scaffolds	Other Third-party reanalysis	Aedes aegypti Culex quinquefasciatus Homo sapiens	3	FASTA TXT SRA Run Selector	Olga Dudchenko	Mar 24, 2017
GSE112636	Diversity of cytosine methylation across the fungi tree of life	Methylation profiling by high throughput sequencing Third-party reanalysis	Agaricus bisporus Aspergillus flavus Aureobasidium pullulans Botrytis cinerea Candida albicans Candidozyma auris Clavispora lusitaniae Coemansia reversa Coemansia spiralis Coprinopsis cinerea Cordyceps militaris Cryptococcus neoformans serotype A Flammula alnicola Fusarium fujikuroi Hesseltinella vesiculosa Heterobasidion irregulare Kirkomyces cordensis Laccaria bicolor Lobosporangium transversale Metarhizium robertsii Microbotryum lychnidis-dioicae Mixia osmundae Neurospora crassa Parasitella parasitica Phanerodontia chrysosporium Phycomyces blakesleeanus Plenodomus lingam Pleurotus ostreatus Podospora anserina Postia placenta Pseudogymnoascus destructans Pyricularia oryzae KJ201 Radiomyces spectabilis Saccharomyces cerevisiae Spinellus fusiger Sporobolomyces roseus Syncephalis fuscata Tilletiopsis washingtonensis Uncinocarpus reesii Wolfiporia cocos	31	TSV TXT XLS SRA Run Selector	Robert J Schmitz	Feb 18, 2019
GSE118579	Identification of gene expression logical invariants in Arabidopsis	Expression profiling by array Third-party reanalysis	Arabidopsis Arabidopsis halleri Arabidopsis lyrata subsp. petraea Arabidopsis thaliana Brassica napus		TXT	Debashis Sahoo	Oct 31, 2018
GSE75071	On the Origin and Evolutionary Consequences of Gene Body DNA Methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis lyrata Arabidopsis thaliana Brassica oleracea Brassica rapa Capsella rubella Eutrema salsugineum	44	BED TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2016
GSE64463	Rate, spectrum, and evolutionary dynamics of spontaneous epimutations	Methylation profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	19	TXT SRA Run Selector	Robert J Schmitz	May 13, 2015
GSE68860	Genome-wide single-molecule sequencing of 6-methyladenine in eukaryotes	Methylation profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana Auricularia delicata Caenorhabditis elegans Chlamydomonas reinhardtii Drosophila melanogaster Nannochloropsis oceanica Saccharomyces cerevisiae	11	BW CSV GFF SRA Run Selector	Denis Tolkunov	Sep 01, 2017
GSE69995	The landscape of gene expression in Arabidopsis	Expression profiling by array Third-party reanalysis	Arabidopsis thaliana		TXT	Eduard Akhunov	Aug 01, 2015
GSE71237	Comparison of low water potential (drought) regulated gene expression in wild type (Col-0) and egr1-1egr2-1 (At3g05640/At5g27930) mutant.	Expression profiling by array Third-party reanalysis	Arabidopsis thaliana	6	CEL TXT	Bhaskara Goivnal Badiger	Oct 08, 2015
GSE71397	Identification of Arabidopsis thaliana PRR9 regulated clock components and circadian outputs through genome-wide binding sites analysis	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	4	BED TXT XLS SRA Run Selector	Tiffany L Liu	Dec 03, 2015
GSE96994	DDM1/Lsh remodelers allow methylation of DNA wrapped in nucleosomes	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	15	BED BW GFF TXT SRA Run Selector	David B. Lyons	Nov 15, 2017
GSE119083	Plant Boolean Implication Network	Expression profiling by array Third-party reanalysis	Arabidopsis thaliana		TXT	Debashis Sahoo	Aug 29, 2018
GSE119128	An unbiased Boolean analysis of public gene expression data for core cell cycle gene classification	Expression profiling by array Third-party reanalysis	Arabidopsis thaliana Drosophila melanogaster Homo sapiens Mus musculus			Debashis Sahoo	Aug 29, 2018
GSE120653	TREE1-EIN3 mediated transcriptional repression inhibits shoot growth in the response to ethylene	Expression profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	2	DIFF SRA Run Selector	Hong Qiao	Nov 04, 2020
GSE120668	Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin	Expression profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	3	TXT SRA Run Selector	Michael Borg	Mar 17, 2020
GSE122398	Epigenetic mapping of the Arabidopsis metabolome reveals mediators of the epigenotype-phenotype map	Methylation profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana		XLS	Rashmi Rekha Hazarika	Nov 10, 2018
GSE125378	Distinct characteristics of Arabidopsis thaliana circular RNAs	Expression profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	9	TXT SRA Run Selector	Sascha Laubinger	Jan 24, 2019
GSE126930	Paternally-acting canonical RNA-directed DNA methylation pathway genes sensitizes Arabidopsis endosperm to paternal dosage [miRNA-Seq]	Non-coding RNA profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	4	BEDGRAPH SRA Run Selector	satyaki P Rajavasireddy	May 01, 2019
GSE126931	Paternally-acting canonical RNA-directed DNA methylation pathway genes sensitizes Arabidopsis endosperm to paternal dosage [RNA-Seq]	Expression profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	10	XLSX SRA Run Selector	satyaki P Rajavasireddy	May 01, 2019
GSE130290	ChIP-seq of DRD1, DMS3 and RDM1 in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	4	BED BW SRA Run Selector	Steven E. Jacobsen	Jul 09, 2019
GSE136843	Central clock components modulate plant shade avoidance by directly repressing transcriptional activation activity of PHYTOCHROME-INTERACTING FACTORS	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana		BED TXT WIG	Yu Zhang	Sep 01, 2020