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3274 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Non-coding RNA profiling by high throughput sequencing	Homo sapiens
GSE125520	Zika virus infection induces RNAi-mediated antiviral immunity in human neural progenitors and brain organoids	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti Homo sapiens	5	TXT SRA Run Selector	xi zhou	Apr 15, 2019
GSE133284	Flavivirus induces and antagonizes antiviral RNA interference in both mammals and mosquitoes	Non-coding RNA profiling by high throughput sequencing	Aedes aegypti Homo sapiens	6	TXT SRA Run Selector	xi zhou	Feb 24, 2020
GSE36338	A Role for Small RNAs in DNA Double-Strand Break Repair	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana Homo sapiens	33	TXT SRA Run Selector	Yijun Qi	Mar 27, 2012
GSE47121	Improved genome-wide mapping of uncapped and cleaved transcripts in eukaryotes—GMUCT 2.0	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana Homo sapiens	10	TXT SRA Run Selector	Nathan Daniel Berkowitz	Mar 08, 2014
GSE66224	Chemical modifications mark alternatively spliced and actively degrading messenger RNAs in Arabidopsis and humans	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana Homo sapiens	12	BED SRA Run Selector	Lee Elliott Vandivier	Oct 31, 2015
GSE179677	Small RNA sequencing of the 8 to 30-nucleotide window from various samples	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae Schizosaccharomyces pombe	11	FA SRA Run Selector	Tarik Moroy	Sep 29, 2021
GSE14511	Quantification of synthetic miRNAs	Non-coding RNA profiling by array Non-coding RNA profiling by high throughput sequencing	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4	18	TXT ZIP	Hanni Willenbrock	Sep 08, 2009
GSE39809	MicroRNA expression profiling after short-term exposure to TCDD in zebrafish embryos	Non-coding RNA profiling by array Non-coding RNA profiling by high throughput sequencing	Betapolyomavirus hominis Betapolyomavirus macacae Danio rerio Homo sapiens Human alphaherpesvirus 1 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Mus musculus Rattus norvegicus human gammaherpesvirus 4	36	TXT	Neelakanteswar Aluru	Aug 02, 2012
GSE41360	Multiple platform assessment and isomir analysis of the EGF dependent microRNA-ome by microarray and deep sequencing analysis	Non-coding RNA profiling by array Non-coding RNA profiling by high throughput sequencing	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus human gammaherpesvirus 4	20	TXT	Lauro Sumoy	Jun 11, 2013
GSE41539	Neonatal and adult cardiomyocytes	Non-coding RNA profiling by array Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Mus musculus cytomegalovirus 2 Rattus norvegicus human gammaherpesvirus 4	17	TXT	Miguel Mano	Oct 13, 2012
GSE117748	MicroRNA-mediated suppression of the TGF-β pathway confers transmissible and reversible CDK4/6 inhibitor resistance	Expression profiling by array Expression profiling by high throughput sequencing Non-coding RNA profiling by array Non-coding RNA profiling by high throughput sequencing	Betapolyomavirus hominis Betapolyomavirus macacae Cytomegalovirus Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human immunodeficiency virus 1 JC polyomavirus Lymphocryptovirus Merkel cell polyomavirus Rhadinovirus	75	CEL TXT	Liam Cornell	Mar 04, 2019
GSE267848	Efficient small DNA fragment sequencing and miRNA, small RNA or csRNA-seq libraries using AVITI	Other Non-coding RNA profiling by high throughput sequencing	Bison bison Bos taurus Homo sapiens	28	BEDGRAPH GTF TXT	Sascha Duttke	Jun 26, 2024
GSE63933	Onchocerca-derived small RNAs in host nodules and serum	Non-coding RNA profiling by high throughput sequencing	Bos taurus Homo sapiens	5	TXT SRA Run Selector	Alasdair Ivens	Apr 24, 2015
GSE64942	Piwi proteins and piRNAs in mammalian oocytes and early embryos	Non-coding RNA profiling by high throughput sequencing	Bos taurus Homo sapiens Macaca fascicularis	41	FASTA SRA Run Selector	David Rosenkranz	Mar 27, 2015
GSE126424	Cross-species association of microRNA expression in mammary epithelial cells with stem/progenitor characteristics and cancer susceptibility	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Bos taurus Canis lupus familiaris Equus caballus Homo sapiens Rattus norvegicus Sus scrofa	24	CSV SRA Run Selector	Praveen Sethupathy	Feb 04, 2023
GSE38799	miRNA expression profile and small RNA transcriptome in the Squalius alburnoides complex	Non-coding RNA profiling by array Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans Danio rerio Drosophila melanogaster Gallus gallus Homo sapiens Mus musculus Rattus norvegicus Squalius alburnoides Squalius pyrenaicus Takifugu rubripes	8	TXT	Angela Inácio	Jan 02, 2013
GSE55333	Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens	34	GFF TSV TXT WIG	Marvin Jens	Nov 20, 2014
GSE96824	QsRNA-seq: a method for high-throughput profiling and quantifying small RNAs	Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens	18	XLSX SRA Run Selector	Ayelet Lamm	Jun 07, 2018
GSE160304	The ZSWIM8 ubiquitin ligase mediates target-directed microRNA degradation	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Caenorhabditis elegans Drosophila melanogaster Homo sapiens Mus musculus	101	TXT SRA Run Selector	Charlie Y. Shi	Dec 22, 2020
GSE249786	Mitochondrial RNA-seq and total RNA-seq of 293T, HeLa, and N2a cells; RIP-seq of SUPV3L1, ceSUPV3L1, ATP5B, and TRAP1; Small RNA-seq of 293T mitochondrial fractions	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Caenorhabditis elegans Homo sapiens Mus musculus	34	BW CSV TXT	Xu Liu	Dec 19, 2023