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21 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana		TSV
GSE152971	Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	69	BED BW TSV SRA Run Selector	Ranjith Papareddy	Jun 25, 2020
GSE250329	Interplay between coding and non-coding regulation drives the Arabidopsis seed-to-seedling transition (csRNA-seq)	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	32	BED BEDGRAPH BW TSV	Julia I. Qüesta	Feb 01, 2024
GSE108401	The Complex Architecture of Transgene Insertions	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	39	BW TSV TXT SRA Run Selector	Joseph R Ecker	Mar 16, 2018
GSE223590	Coding and noncoding transcriptomes of NODULIN HOMEOBOX (NDX) deficient Arabidopsis inflorescence [ncRNA-Seq]	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	6	BW TSV	Lorant Szekvolgyi	Jun 07, 2023
GSE239837	Arabidopsis AGO1 N-terminal Poly-Q domain promotes phase separation and association with stress granules during heat stress	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	36	GTF TSV	Patricia Baldrich Gonzalez	Jan 30, 2024
GSE98285	The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci (miRNA-Seq)	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	12	TDF TSV SRA Run Selector	Heng Zhang	Apr 28, 2017
GSE30970	Arabidopsis AGO5 contributes to a POL II-based RNA silencing pathway directing epigenetic marks	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	7	TSV SRA Run Selector	Krys Kelly	Jul 27, 2014
GSE112632	Specific Parallel Analysis of RNA Ends	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	8	TSV SRA Run Selector	Uciel Pablo Chorostecki	Sep 11, 2018
GSE116376	Specific Parallel Analysis of RNA End and Small RNA libraries	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	10	TSV TXT	Uciel Pablo Chorostecki	Sep 11, 2018
GSE118705	Small RNA-seq of the Arabidopsis mRNA export mutant aly1 and associated controls	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	7	TSV SRA Run Selector	R. Keith Slotkin	May 15, 2019
GSE118709	Methylome, transcriptome, RIP-seq and small RNA-seq of the Arabidopsis mRNA export mutant aly1 and associated controls	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	38	TSV TXT	R. Keith Slotkin	May 15, 2019
GSE132066	MicroRNA Dynamics and Functions During Arabidopsis Embryogenesis	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	69	TSV SRA Run Selector	Michael D Nodine	Sep 24, 2019
GSE133618	Arabidopsis RNA Polymerase IV generates 21-22 nucleotide small RNAs that can participate in RNA-directed DNA methylation and may regulate genes	Other Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	19	TSV SRA Run Selector	R. Keith Slotkin	Feb 24, 2020
GSE147464	miRNA159b shows reduced expression in rdr1 mutant Arabidopsis thaliana	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	6	TSV SRA Run Selector	Archana Singh	Mar 31, 2023
GSE155369	Epigenetic reprogramming rewires transcription during the alternation of generations in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	19	TSV	Michael Borg	Jan 26, 2021
GSE165574	An siRNA-guided AGO protein recruits Polymerase V to initiate RNA-directed DNA methylation (smallRNA-seq dataset)	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	45	TSV SRA Run Selector	R. Keith Slotkin	Sep 02, 2021
GSE165575	An siRNA-guided AGO protein recruits Polymerase V to initiate RNA-directed DNA methylation	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	111	TSV	R. Keith Slotkin	Sep 02, 2021
GSE172377	Identification of abscisic acid-associated known and novel miRNAs and their target genes in Arabidopsis thaliana	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	24	TSV SRA Run Selector	Agnieszka Ludwików	Jul 15, 2021
GSE182403	A plant tethering system for the functional study of protein-RNA interactions in vivo	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	4	TSV SRA Run Selector	R. Keith Slotkin	May 02, 2022
GSE201840	Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis [sRNA-seq]	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	6	TSV	Márton Miskei	Aug 09, 2022