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1226 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Non-coding RNA profiling by high throughput sequencing			XLSX
GSE52996	Contribution of natural antisense transcription to an endogenous siRNA signature in human cells	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	3	BED XLSX SRA Run Selector	Simon Cockell	Feb 28, 2014
GSE77120	MYOCD overexpression in HCASMs	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	4	BED XLSX SRA Run Selector	mingyan lin	Aug 31, 2016
GSE89957	Analysis of human ES cell differentiation establishes that the dominant isoforms of the lncRNAs RMST and FIRRE are circular	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Homo sapiens	31	BED XLSX SRA Run Selector	Michael Jackson	Mar 28, 2018
GSE104284	Transcriptional and Chromatin Dynamics of Muscle Regneration after Severe Trauma	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	332	BED GAPPEDPEAK XLSX SRA Run Selector	Darrell Orlyn Ricke	Sep 26, 2017
GSE149631	Targeted determination of pri-miRNA processing	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	49	BED BW TXT XLSX SRA Run Selector	Benjamin Lang	May 01, 2020
GSE155368	Epigenetic reprogramming events rewire transcription during the alternation of generations in Arabidopsis [Small RNA-Seq]	Non-coding RNA profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana		BED BW XLSX	Michael Borg	Jan 26, 2021
GSE159789	Genome-wide maps of small RNA transcription in young and old mouse oocytes	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	10	BED BW XLSX SRA Run Selector	Michael Klutstein	Nov 05, 2020
GSE178127	The Integrator complex regulates microRNA abundance through RISC loading	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	190	BED BW FASTA GTF TSV XLSX SRA Run Selector	Felipe Beckedorff	Feb 14, 2023
GSE196736	N6-methyladenosine-modified circRNA in the bovine mammary epithelial cells injured by Staphylococcus aureus and Escherichia coli	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Bos taurus	18	BED XLSX	Changmin Hu	Feb 23, 2022
GSE208023	Transcriptomic m6A MeRIP-seq in human metastatic ovarian carcinoma and in situ ovarian carcinoma tissue	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	12	BED XLSX	Hongxi Zhao	Jul 15, 2022
GSE233927	Comparative analysis of nascent transcription among plant species	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana Carica papaya Chlamydomonas reinhardtii Drosophila melanogaster Hordeum vulgare Physcomitrium patens Selaginella moellendorffii Zea mays	68	BED TXT XLSX	Sascha Duttke	Sep 28, 2023
GSE60988	Tracking distinct RNA populations using efficient and reversible covalent chemistry	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	24	BEDGRAPH XLSX SRA Run Selector	Erin Elizabeth Duffy	Sep 03, 2015
GSE74097	Silencio/CG9754 connects the Piwi-piRNA complex to the cellular heterochromatin machinery	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	46	BEDGRAPH BW XLSX SRA Run Selector	Grzegorz Sienski	Nov 19, 2015
GSE75113	MicroRNA-offset RNA regulates gene expression and cell proliferation (Small RNA-Seq)	Non-coding RNA profiling by high throughput sequencing	Mus musculus	3	BEDGRAPH XLSX SRA Run Selector	Gavin R. Schnitzler	Jun 01, 2016
GSE87785	Sequencing-based analyses characterize a tumor suppressive role of mir-1271 repressed by DNA hypermethylation in gastric cancer	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	19	BEDGRAPH XLSX SRA Run Selector	Jong Hwan Kim	Jun 12, 2018
GSE166636	Mouse paternal RNAs initiate a pattern of metabolic disorders in a strain-dependent manner	Non-coding RNA profiling by high throughput sequencing	Mus musculus	16	BEDGRAPH XLSX SRA Run Selector	Minoo Rassoulzadegan	Apr 20, 2022
GSE183280	SARS-CoV-2 expresses a microRNA-like small RNA able to selectively repress host genes	Non-coding RNA profiling by high throughput sequencing	Homo sapiens Severe acute respiratory syndrome coronavirus 2	51	BEDGRAPH CSV XLSX SRA Run Selector	Paulina Pawlica	Nov 28, 2021
GSE108917	LncRNAs and open chromatin regions constitute midbrain dopaminergic neuron- specific molecular signatures	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	11	BROADPEAK XLSX SRA Run Selector	Philippe Ravassard	Jan 09, 2019
GSE66000	Identification of sex-specific hepatic lincRNAs using nuclear RNA-Seq	Non-coding RNA profiling by high throughput sequencing	Mus musculus	2	BW XLSX SRA Run Selector	David J. Waxman	Oct 21, 2015
GSE66001	Gene expression profile of adult male mouse liver using total liver RNA-seq and nuclear liver RNA-Seq	Non-coding RNA profiling by high throughput sequencing	Mus musculus	4	BW XLSX SRA Run Selector	David J. Waxman	Oct 21, 2015