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111 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Non-coding RNA profiling by high throughput sequencing			WIG
GSE42695	Genome-wide profiling of long non-coding RNAs in Arabidopsis	Other Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	12	TXT WIG SRA Run Selector	Yijun Qi	Nov 28, 2015
GSE55331	Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates (small RNA AGO-IP)	Other Non-coding RNA profiling by high throughput sequencing	Homo sapiens	2	GFF TSV WIG SRA Run Selector	Marvin Jens	Nov 20, 2014
GSE55332	Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates (CEL small RNA)	Other Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	2	GFF WIG SRA Run Selector	Marvin Jens	Nov 20, 2014
GSE55333	Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates	Other Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens	34	GFF TSV TXT WIG	Marvin Jens	Nov 20, 2014
GSE61439	Pol-IV dependent transcripts in Arabidopsis	Other Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	42	PDF TXT WIG XLSX SRA Run Selector	Steve Jacobsen	Sep 13, 2015
GSE63048	MORC1 represses transposable elements in the mouse male germ line	Other Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	64	BW TXT WIG SRA Run Selector	Hume Stroud	Dec 12, 2014
GSE63437	A variety of Dicer substrates in human and C. elegans (HEK PAR-CLIP)	Other Non-coding RNA profiling by high throughput sequencing	Homo sapiens	5	WIG SRA Run Selector	Marvin Jens	Nov 20, 2014
GSE94748	Identification of the Sulfolobus acidocaldarius small RNome and L7Ae-RNA interactome	Other Non-coding RNA profiling by high throughput sequencing	Sulfolobus acidocaldarius	5	WIG SRA Run Selector	Michael Daume	Feb 10, 2017
GSE203049	AGO2 silences mobile transposons in the nucleus of quiescent cells	Other Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus Mus musculus	32	BW WIG	Joana A Vidigal	Jul 18, 2022
GSE276343	Metabolic Reprogramming of Iron Endows the Function of ISCA2-TET Interaction During Peri-implantation Development (EM-Seq)	Other Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	18	RESULTS TXT WIG	Xinyu Wang	Sep 10, 2024
GSE16256	UCSD Human Reference Epigenome Mapping Project	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE20757	miRNA expression profiling in embryonic chicken heart	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Gallus gallus	5	WIG SRA Run Selector	Henk Buermans	Dec 21, 2010
GSE29943	Unstressed HeLa cells and ELAVL1/HuR knock down conditions: polyA RNA-Seq, small RNA-Seq, and PAR-CLIP	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	9	BED TXT WIG SRA Run Selector	Marvin Jens	Jun 30, 2011
GSE30772	The human mitochondrial transcriptome	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	7	WIG SRA Run Selector	Tim R. Mercer	Jul 20, 2011
GSE32111	Gene induction and repression during terminal erythropoiesis are mediated by distinct epigenetic changes.	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22	TXT WIG	Bill Wong	Sep 14, 2011
GSE32726	Identification of miR-4423 as a Primate-Specific microRNA Highly Expressed in Ciliated Airway Epithelium and Associated with Lung Cancer [high throughput sequencing]	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	4	BED WIG SRA Run Selector	Avrum Spira	Oct 08, 2013
GSE33473	Small RNA analysis of wildtype Mouse embryo and Adar1 null mouse embryo at E11.0 and E11.5 together with mRNA-seq results of E11.5	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	6	BED SAM TXT WIG SRA Run Selector	Kazuko Nishikura	May 01, 2013
GSE35842	RIP-seq analysis of eukaryotic Sm proteins identifies three major categories of Sm-containing ribonucleoproteins	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	28	BEDGRAPH RPKM TXT WIG SRA Run Selector	Zhipeng Lu	Dec 01, 2013
GSE36340	Comparative Profiling of Pseudomonas aeruginosa Strains Reveals Differential Expression of Novel Unique and Conserved Small RNAs	Non-coding RNA profiling by high throughput sequencing	Pseudomonas aeruginosa	4	WIG SRA Run Selector	David Stephen Horner	Jun 04, 2012