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111 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Non-coding RNA profiling by high throughput sequencing			WIG
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE20757	miRNA expression profiling in embryonic chicken heart	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Gallus gallus	5	WIG SRA Run Selector	Henk Buermans	Dec 21, 2010
GSE29943	Unstressed HeLa cells and ELAVL1/HuR knock down conditions: polyA RNA-Seq, small RNA-Seq, and PAR-CLIP	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	9	BED TXT WIG SRA Run Selector	Marvin Jens	Jun 30, 2011
GSE30772	The human mitochondrial transcriptome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	7	WIG SRA Run Selector	Tim R. Mercer	Jul 20, 2011
GSE32111	Gene induction and repression during terminal erythropoiesis are mediated by distinct epigenetic changes.	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22	TXT WIG	Bill Wong	Sep 14, 2011
GSE32726	Identification of miR-4423 as a Primate-Specific microRNA Highly Expressed in Ciliated Airway Epithelium and Associated with Lung Cancer [high throughput sequencing]	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	4	BED WIG SRA Run Selector	Avrum Spira	Oct 08, 2013
GSE33473	Small RNA analysis of wildtype Mouse embryo and Adar1 null mouse embryo at E11.0 and E11.5 together with mRNA-seq results of E11.5	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	6	BED SAM TXT WIG SRA Run Selector	Kazuko Nishikura	May 01, 2013
GSE35842	RIP-seq analysis of eukaryotic Sm proteins identifies three major categories of Sm-containing ribonucleoproteins	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	28	BEDGRAPH RPKM TXT WIG SRA Run Selector	Zhipeng Lu	Dec 01, 2013
GSE36340	Comparative Profiling of Pseudomonas aeruginosa Strains Reveals Differential Expression of Novel Unique and Conserved Small RNAs	Non-coding RNA profiling by high throughput sequencing	Pseudomonas aeruginosa	4	WIG SRA Run Selector	David Stephen Horner	Jun 04, 2012
GSE37063	Identification of intermediate-sized non-coding RNAs involved in the UV-induced DNA damage response in C. elegans	Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	3	WIG SRA Run Selector	Guifeng Wei	May 01, 2012
GSE37644	MORC family ATPases required for heterochromatin condensation and gene silencing	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	26	TXT WIG SRA Run Selector	Shawn J. Cokus	May 03, 2012
GSE38560	CpG islands and GC content dictate nucleosome depletion in a transcription independent manner at mammalian promoters (RNA-seq)	Non-coding RNA profiling by high throughput sequencing	Mus musculus	1	WIG SRA Run Selector	Romain Fenouil	Jun 12, 2012
GSE38577	CpG islands and GC content dictate nucleosome depletion in a transcription independent manner at mammalian promoters	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	WIG	Romain Fenouil	Jun 12, 2012
GSE39024	Deep sequencing of small RNAs	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	4	WIG SRA Run Selector	Motoaki Seki	Jul 13, 2017
GSE39033	Deep sequencing of uncapped RNA in rdr1/2/6 and wild-type Arabidopsis plants	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	4	WIG SRA Run Selector	Motoaki Seki	Jul 13, 2017
GSE39037	Deep sequencing of small and uncapped RNA in rdr1/2/6 and wild-type Arabidopsis plants	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	8	BED WIG	Motoaki Seki	Jul 13, 2017
GSE40460	RSD-2 and RSD-6 promote germ cell immortality by repressing spermatogenesis and repeat loci via small interfering RNAs	Expression profiling by genome tiling array Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	15	FA PAIR WIG	Eric A. Miska	Jun 01, 2013
GSE40573	Reduced insulin/IGF-1-like signaling restores germ cell immortality in Caenorhabditis elegans Piwi mutants	Non-coding RNA profiling by high throughput sequencing Expression profiling by genome tiling array	Caenorhabditis elegans	11	FA PAIR WIG	Eric A. Miska	Jun 01, 2013
GSE40943	The Oscillating miRNA 959-964 cluster impacts Drosophila feeding time and other circadian outputs [miRNA-seq].	Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	6	WIG SRA Run Selector	Stefan Pescatore	Nov 02, 2012