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59 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Non-coding RNA profiling by high throughput sequencing			GTF
GSE24565	Small RNA-seq from ENCODE/Cold Spring Harbor Lab	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	87	BAM BEDRNAELEMENTS BIGWIG GTF PDF TXT SRA Run Selector	ENCODE DCC	Oct 08, 2010
GSE26284	ENCODE Cold Spring Harbor Labs Long RNA-seq	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	84	BAM BB BEDRNAELEMENTS BIGWIG GFF GTF PDF SRA Run Selector	ENCODE DCC	Dec 28, 2010
GSE33092	Oncogenic BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration [HT-seq]	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	4	BW GTF SRA Run Selector	Douglas Porter	Apr 28, 2012
GSE37169	Oncogenic BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by array	Homo sapiens	7	BW CEL GTF	Douglas Porter	Apr 28, 2012
GSE38596	Genome-wide maps of cytosine methylation, cytosine hydroxylmethylation and small non coding RNAs in mouse ES cells and upon guided differentiation to mesoendoderm cells	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Sep 22, 2012
GSE41476	RNA-seq for gastric cancer and normal tissues/cells	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	8	GTF SRA Run Selector	Seongmin Park	Oct 10, 2013
GSE45326	Identification of expressed and conserved human non-coding RNAs	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	12	GTF SRA Run Selector	Morten Muhlig Nielsen	Sep 01, 2013
GSE46512	Ribosome Profiling over a Zebrafish Developmental Timecourse	Non-coding RNA profiling by high throughput sequencing	Danio rerio	8	BW GTF TXT SRA Run Selector	Guo-Liang Chew	May 23, 2013
GSE51264	Conserved expression of lincRNA during human and macaque prefrontal cortex development and maturation	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens Macaca mulatta	78	GTF TSV SRA Run Selector	Zhisong He	May 14, 2014
GSE52310	Long RNA Seq on Sham Adult Mouse Heart	Non-coding RNA profiling by high throughput sequencing	Mus musculus	4	GTF TXT SRA Run Selector	Frederic Burdet	Nov 12, 2016
GSE52313	Long RNA Seq on Sham vs MI Adult Mouse Heart	Non-coding RNA profiling by high throughput sequencing	Mus musculus	8	GTF TXT SRA Run Selector	Frederic Burdet	May 06, 2014
GSE52503	Targeted RNA sequencing for gene discovery and quantification	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	1	BED GTF TXT SRA Run Selector	Tim R. Mercer	Mar 01, 2014
GSE53763	Genome-wide identification of Hfq-regulated small RNAs in the bacterial pathogen Erwinia amylovora	Non-coding RNA profiling by high throughput sequencing	Erwinia amylovora	12	GTF TXT SRA Run Selector	Quan Zeng	Jan 15, 2014
GSE57049	Localization and Abundance Analysis of Human lncRNAs at Single Cell and Single Molecule Resolution	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	7	FPKM_TRACKING GTF SRA Run Selector	Nataly Moran Cabili	Jan 07, 2015
GSE58283	Gene expression profiling of mouse bone marrow-derived macrophages (RNA-Seq)	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	8	GTF TXT SRA Run Selector	Mark Ibberson	Nov 01, 2014
GSE61348	Endogenous miRNA and target concentrations determine susceptibility to potential ceRNA competition, based on hierarchical binding affinities	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Mus musculus	9	BW FPKM_TRACKING GTF TXT	Jesse R Zamudio	Nov 10, 2014
GSE61474	Quantitative profiling of long noncoding RNAs with targeted RNA sequencing.	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	77	GTF TSV XLSX SRA Run Selector	Giovanni Bussotti	Mar 10, 2015
GSE69753	Long non-coding RNA landscape in human monocytes	Non-coding RNA profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	4	GTF SRA Run Selector	Srikanth Srinivas Manda	Feb 19, 2016
GSE71315	Single cell analysis of long non-coding RNAs in the developing human neocortex	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	242	BW GTF TXT SRA Run Selector	John Liu	Mar 28, 2016
GSE73144	Regulation of mRNA Levels by Suicidal Introns that Induce Nuclear Decay	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Schizosaccharomyces pombe	10	GTF SRA Run Selector	Sander Granneman	Nov 19, 2015