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127 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Non-coding RNA profiling by high throughput sequencing			BEDGRAPH
GSE20330	Hairpin RNA induces secondary small interfering RNA synthesis and silencing in trans in fission yeast	Non-coding RNA profiling by high throughput sequencing	Schizosaccharomyces pombe	3	BEDGRAPH FNA GFF SRA Run Selector	Alastair Robert Kerr	Feb 15, 2010
GSE22680	High-throughput sequencing analyses of two ants: Camponotus floridanus and Harpegnathos saltator	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Camponotus floridanus Harpegnathos saltator	20	BEDGRAPH FA SRA Run Selector	zhiyong huang	Aug 27, 2010
GSE25897	Paternally-induced transgenerational environmental reprogramming of metabolic gene expression in mammals (small RNA)	Non-coding RNA profiling by high throughput sequencing	Mus musculus	8	BEDGRAPH TXT	naomi habib	Jan 14, 2011
GSE25899	Paternally-induced transgenerational environmental reprogramming of metabolic gene expression in mammals	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by array	Mus musculus	42	BEDGRAPH CEL GPR TXT	naomi habib	Jan 14, 2011
GSE27443	RNA-Seq of rRNA depleted circulating endothelial progenitor cells (cEPCs) in trisomy 21 and euploid samples	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	2	BED BEDGRAPH TXT	Valerio Costa	May 05, 2011
GSE27404	Deep sequencing and functional annotation reveal miRNAs implicated in the cell senescence phenotype	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	2	BEDGRAPH SRA Run Selector	Dario Boffelli	Aug 09, 2011
GSE29972	Deep sequencing the circadian transcriptome of Drosophila brain	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	24	BED BEDGRAPH TXT SRA Run Selector	Michael Hughes	Jan 01, 2012
GSE28080	Identification of long non-protein coding RNAs in chicken skeletal muscle by Solexa sequencing	Non-coding RNA profiling by high throughput sequencing	Gallus gallus	1	BED BEDGRAPH	Tingting Li	Feb 20, 2012
GSE39086	DGCR8 HITS-CLIP reveals novel functions for the Microprocessor (CLIP-seq)	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	4	BEDGRAPH SRA Run Selector	Mireya Plass	Jul 15, 2012
GSE31577	Genome-wide analysis of global and caste-specific DNA methylation in two ant species: Camponotus floridanus and Harpegnathos saltator	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Camponotus floridanus Harpegnathos saltator	47	BEDGRAPH FA	Hong zhi Cao	Aug 09, 2012
GSE40050	Persistent androgen receptor-mediated transcription in castration-resistant prostate cancer under androgen-deprived conditions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	35	BEDGRAPH TXT SRA Run Selector	Keith F Decker	Oct 02, 2012
GSE40984	Non-coding transcription within the Igh distal VH region at PAIR elements affects the 3D structure of the Igh locus in pro-B cells	Non-coding RNA profiling by high throughput sequencing	Mus musculus	2	BEDGRAPH SRA Run Selector	Lana Schaffer	Oct 18, 2012
GSE35637	UAP56 couples piRNA clusters to the perinuclear transposon silencing machinery [RNA-Seq and RIP-Seq]	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	9	BEDGRAPH TXT SRA Run Selector	Jie Wang	Nov 28, 2012
GSE49078	Stable pausing by RNA polymerase II provides an opportunity to target and integrate regulatory signals	Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	9	BEDGRAPH SRA Run Selector	Karen Adelman	Oct 31, 2013
GSE35842	RIP-seq analysis of eukaryotic Sm proteins identifies three major categories of Sm-containing ribonucleoproteins	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	28	BEDGRAPH RPKM TXT WIG SRA Run Selector	Zhipeng Lu	Dec 01, 2013
GSE43520	The evolution of lncRNA repertoires and expression patterns in tetrapods	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Gallus gallus Gorilla gorilla Homo sapiens Macaca mulatta Monodelphis domestica Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	55	BEDGRAPH TXT SRA Run Selector	Anamaria Necsulea	Jan 19, 2014
GSE50486	rrp6l1-2 project	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	5	BEDGRAPH WIG SRA Run Selector	Jian-Kang Zhu	Apr 16, 2014
GSE49624	Chromatin and Transcription Transitions of Mammalian Adult Germline Stem Cells and Spermatogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	73	BEDGRAPH TXT USEQ	Diana HP Low	May 19, 2014
GSE55338	Dicer-microRNA-Myc circuit promotes transcription of hundreds of long noncoding RNAs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	11	BEDGRAPH TXT SRA Run Selector	Kun Qu	Jun 15, 2014
GSE31009	miRNA of Pacific oyster Crassostrea gigas for different organs and developmental stages	Non-coding RNA profiling by high throughput sequencing	Magallana gigas	21	BEDGRAPH SRA Run Selector	Fei Xu	Jul 26, 2014