GEO Browser - GEO

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557 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Homo sapiens		HIC
GSE63525	A three-dimensional map of the human genome at kilobase resolution reveals prinicples of chromatin looping	Other	Homo sapiens Mus musculus	200	BED HIC RTF TXT SRA Run Selector	Suhas Rao	Dec 11, 2014
GSE71831	Deletion of DXZ4 on the human inactive X chromosome eliminates superdomains and impairs gene silencing	Other Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	101	HIC PDF TSV TXT SRA Run Selector	Miriam Huntley	Jul 19, 2016
GSE80820	HiChIP: Efficient and sensitive analysis of protein-directed genome architecture	Other	Homo sapiens Mus musculus	18	HIC TXT SRA Run Selector	Ryan Alexander Flynn	Aug 31, 2016
GSE92793	Hi-C from A549 (ENCSR244BBG)	Other	Homo sapiens	7	BEDPE HIC TSV TXT	ENCODE DCC	Jan 10, 2017
GSE92804	Hi-C from A549 (ENCSR393LOP)	Other	Homo sapiens	8	BEDPE HIC TSV TXT	ENCODE DCC	Jan 10, 2017
GSE92811	Hi-C from A549 (ENCSR499RVD)	Other	Homo sapiens	8	BEDPE HIC TSV TXT	ENCODE DCC	Jan 10, 2017
GSE92819	Hi-C from A549 (ENCSR662QKG)	Other	Homo sapiens	8	BEDPE HIC TSV TXT	ENCODE DCC	Jan 10, 2017
GSE92825	Hi-C from A549 (ENCSR757IVO)	Other	Homo sapiens	8	BEDPE HIC TSV TXT	ENCODE DCC	Jan 10, 2017
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE98552	Chromatin structure and CTCF across the MCF10 breast cancer progression series (HiC)	Other Third-party reanalysis	Homo sapiens	4	BED HIC MATRIX SRA Run Selector	Jonathan AR Gordon	May 23, 2017
GSE102884	Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL and PDS5 proteins	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	30	HIC WIG SRA Run Selector	Roman R Stocsits	Dec 07, 2017
GSE103477	Transcription elongation regulates genome 3D structure	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	253	BED BEDGRAPH HIC TXT SRA Run Selector	Christopher Benner	Aug 23, 2018
GSE104333	Cohesin loss eliminates all loop domains [HiC]	Other	Homo sapiens	77	HIC SRA Run Selector	Suhas Rao	Oct 05, 2017
GSE104334	Cohesin loss eliminates all loop domains	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	132	BW HIC TDF	Suhas Rao	Oct 05, 2017
GSE104579	DNA methylation state is associated with the formation of loops and links in hematopoietic stem cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	18	BED BW HIC	Jianzhong Su	Nov 24, 2017
GSE105028	Architectural proteins and pluripotency factors cooperate to orchestrate the transcriptional response of hESCs to temperature stress	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	93	BED BW HIC SRA Run Selector	XIAOWEN LYU	Aug 03, 2018
GSE107148	DNA methylation state is associated with the formation of loops and links in hematopoietic stem cells [HiC]	Other	Homo sapiens	4	HIC SRA Run Selector	Jianzhong Su	Nov 24, 2017
GSE107447	Altered chromosomal topology drives oncogenic programs in SDH-deficient GISTs	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	100	BED BW CSV HIC TXT	Yotam Drier	Oct 16, 2019
GSE109924	TAD cliques shape the 4-dimensional genome during dual lineage terminal differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	34	BED BW FPKM_TRACKING HIC SRA Run Selector	Philippe Collas	Feb 23, 2019
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020