GEO Browser - GEO

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22 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Homo sapiens		GTF
GSE63473	Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	203	BAM FASTA GTF TXT	Evan Macosko	May 20, 2015
GSE64332	Human DIS3 shapes the RNA polymerase II transcriptome degrading variety of unwanted transcripts.	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	17	BEDGRAPH GTF TSV SRA Run Selector	Andrzej Dziembowski	Aug 20, 2015
GSE75792	TT-Seq captures the human transient transcriptome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	12	GTF TXT SRA Run Selector	Björn Schwalb	Jun 03, 2016
GSE104949	RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination	Other	Homo sapiens	6	GTF SRA Run Selector	Shaun Michael Webb	Jul 27, 2018
GSE117888	Role of GR in protection of podocyte	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	16	BEDGRAPH BROADPEAK GTF HIC NARROWPEAK SRA Run Selector	Jingping Yang	May 23, 2021
GSE130827	Effect of Cell cycle regulator CDK1 on Cell Differentiation (RNA-IP CDK1 inh KD)	Other	Homo sapiens	16	BED BW GTF SRA Run Selector	Rodrigo Andres Grandy	May 31, 2021
GSE147646	The transcriptome, histone modification and chromatin organization of kidney tubule cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	11	BED BW GTF HIC SRA Run Selector	Jingping Yang	Feb 02, 2021
GSE148433	Efficient RNA polymerase II pause release requires U2 snRNP function	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	48	BW GTF SRA Run Selector	Sara Patricia Monteiro Martins	Jan 31, 2021
GSE160396	Identification of causal genes about osteoporosis associated with risk loci using DLO Hi-C	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	15	BEDGRAPH BW GTF	LI LI	Feb 08, 2023
GSE186599	TULIPs decorate the three-dimensional genome of PFA ependymoma	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	160	BED BEDGRAPH BEDPE BROADPEAK BW GTF HIC MCOOL RDATA TDF TSV WIG	Marco Gallo	Jul 05, 2024
GSE203496	Sites of transcription initiation drive mRNA isoform selection [HumanOrganoids]	Other	Homo sapiens	6	GFF GTF	Valérie Hilgers	May 10, 2023
GSE203583	Sites of transcription initiation drive mRNA isoform selection	Other Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	69	CSV GFF3 GTF TXT	Valérie Hilgers	May 10, 2023
GSE205565	Matrin3 regulates mitotic spindle dynamics by controlling alternative splicing of CDC14B [Iso-Seq]	Other Expression profiling by high throughput sequencing	Homo sapiens	1	GTF XLSX	Ashish Lal	Mar 17, 2023
GSE213984	TEQUILA-seq: a versatile and low-cost method for targeted long-read RNA sequencing	Expression profiling by high throughput sequencing Other	Homo sapiens	123	GTF TXT SRA Run Selector	Yi Xing	Jun 06, 2023
GSE230441	Isoform-specific translational control is evolutionarily conserved in primates	Other	Homo sapiens Pan troglodytes Pongo abelii	30	GTF TSV	Jeremy Sanford	Apr 30, 2024
GSE231767	heart healthy and heart diseased SCGs	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	25	GTF HDF5 MTX TAR TSV XLSX	Karin A. Ziegler	Jul 20, 2023
GSE234489	Herpesviruses mimic zygotic genome activation to promote viral replication	Expression profiling by high throughput sequencing Other	Homo sapiens	80	BW FA GTF TSV TXT	Emanuel Wyler	Jun 11, 2023
GSE244655	Long read subcellular fractionation and sequencing reveals the translational fate of full length mRNA isoforms during neuronal differentiation	Expression profiling by high throughput sequencing Other	Homo sapiens	40	GTF XLSX	Jeremy Sanford	Mar 11, 2024
GSE250427	High-density resolution of the Kaposi’s Sarcoma associated Herpesvirus transcriptome identifies novel transcript isoforms generated by long-range transcription and alternative splicing [BCBL-1-direct-cDNA-Seq]	Other	Homo sapiens	3	GTF	Rolf Renne	May 20, 2024
GSE250434	High-density resolution of the Kaposi’s Sarcoma associated Herpesvirus transcriptome identifies novel transcript isoforms generated by long-range transcription and alternative splicing [iSLK-WTBAC-PCR-cDNA-Seq]	Other	Homo sapiens	3	GTF	Rolf Renne	May 20, 2024