GEO Browser - GEO

Series

Samples

Platforms

DataSets

72 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other	Homo sapiens		TXT
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE114981	Activation of HOTTIP lncRNA perturbs HSC function leading to AML like disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	66	BED TXT SRA Run Selector	Suming Huang	Dec 03, 2019
GSE115096	HOXBLINC is aberrantly expressed in acute myeloid leukemia and functions as a potent oncogenic long non-coding RNA in leukemogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	40	BED TXT SRA Run Selector	Suming Huang	Jan 27, 2021
GSE120409	A neutropenia-associated transcription factor mutation differentially impacts target genes in the cell-states traversed during granulocyte specification and commitment	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	833	BED H5 TXT	H. Leighton Grimes	Apr 06, 2020
GSE130119	MAFG-driven astrocytes promote CNS inflammation	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	163	BEDGRAPH CSV TXT	Michael Wheeler	Feb 12, 2020
GSE144281	Genetic interaction mapping and exon-resolution functional genomics with a hybrid Cas9-Cas12a platform	Other	Homo sapiens Mus musculus	14	FASTA TXT SRA Run Selector	Jason Moffat	Jan 28, 2020
GSE148448	Self-reporting transposons enable simultaneous readout of gene expression and transcription factor binding in single cells	Other	Homo sapiens Mus musculus	27	BAM CSV LOOM TSV TXT SRA Run Selector	Robi D Mitra	Jul 23, 2020
GSE149493	Optimized photochemistry and enzymology enable efficient analysis of RNA structures and interactions in cells	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	21	TXT SRA Run Selector	Minjie Zhang	Mar 04, 2021
GSE153651	m6A directs the demethylation of histone H3K9me2 co-transcriptionall	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	56	BED BW TXT SRA Run Selector	linjian xia	Jul 01, 2020
GSE154353	A single-cell method to map higher-order 3D genome organization in thousands of individual cells reveals structural heterogeneity in mouse ES cells	Other	Homo sapiens Mus musculus	3	TXT ZIP SRA Run Selector	Mary Villanueva Arrastia	Aug 12, 2020
GSE155844	PIE-Seq: Identifying RNA-binding Protein Targets by Dual RNA-deaminase Editing and Sequencing	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	66	TXT SRA Run Selector	Xiangbin Ruan	May 17, 2023
GSE156933	A Quantitative Sequencing Method for 5-Formylcytosine in RNA	Other	Homo sapiens Mus musculus synthetic construct	52	TXT XLSX SRA Run Selector	Ruitu Lyu	Aug 01, 2021
GSE158506	Fat1 deletion promotes hybrid EMT state with enhanced tumor progression, stemness, and metastasis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	62	BEDGRAPH TXT VCF	Yura Song	Dec 04, 2020
GSE162511	Single-cell transcriptome and 3D genome atlas of the developing mouse brain	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	4314	HIC TXT	Longzhi Tan	Jan 07, 2021
GSE162739	BAP1 activity regulates Polycomb occupancy and global chromatin condensation counteracting diffuse PCGF3/5-dependent H2AK119ub1 deposition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	192	BED RPKM TSV TXT SRA Run Selector	Federico Rossi	Jun 27, 2021
GSE165049	HOTTIP reinforces CTCF-defined TAD boundaries by forming R-loops to drive Wnt/b-catenin target gene expression in AML leukemogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	51	BED H5 MTX TSV TXT SRA Run Selector	Suming Huang	Feb 18, 2022
GSE168365	In vivo adenine base editing of PCSK9 in mice and macaques reduces LDL-cholesterol levels	Expression profiling by high throughput sequencing Other	Homo sapiens Macaca fascicularis Mus musculus	529	TSV TXT VCF	Tanja Rothgangl	Apr 13, 2021
GSE169121	Tcf1 is essential for initiation of oncogenic Notch1-driven chromatin topology.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	61	BEDGRAPH BEDPE HIC TXT	Nadine Fournier	Jan 21, 2022
GSE171758	Profiling histone modifications in clinical archived formalin fixed paraffin embedded samples	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	60	BW TXT SRA Run Selector	xingqi chen	Sep 03, 2021