GEO Browser - GEO

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20 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other	Homo sapiens		BEDGRAPH
GSE264005	Engineered extrachromosomal circular DNAs promote tumorigenesis (WGS)	Other	Homo sapiens Mus musculus	28	BEDGRAPH	Andrea Ventura	Oct 05, 2024
GSE264006	Engineered extrachromosomal oncogene amplifications promote tumorigenesis	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	48	BEDGRAPH BW TAB	Andrea Ventura	Oct 05, 2024
GSE234699	SMYD5 is a regulator of the mild hypothermia response	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	127	BEDGRAPH BROADPEAK BW H5	Hans Tomas Bjornsson	Jul 26, 2024
GSE241338	Genome-wide interference of chromatin architecture and Mediator in transcriptional bursting and gene network regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	250	BEDGRAPH BW CSV MTX TSV	Seolkyoung Jung	Jun 30, 2024
GSE202042	High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	78	BEDGRAPH BW	Maximilian Christian von der Linde	Jun 22, 2024
GSE256246	Putative looping factor ZNF143/ZFP143 is an essential transcriptional regulator with no looping function.	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	104	BEDGRAPH BW MCOOL	Domenic Narducci	Mar 07, 2024
GSE241444	XIST directly regulates X-linked and autosomal genes in naïve human pluripotent cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	129	BEDGRAPH BROADPEAK	Kathrin Plath	Dec 13, 2023
GSE232490	A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	120	BEDGRAPH BW HIC TBI	Katia Georgopoulos	Nov 20, 2023
GSE197608	Short C-terminal Musashi-1 proteins regulate pluripotency states in embryonic stem cells	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	24	BEDGRAPH BW TXT XLSX	Gufa Lin	Nov 05, 2023
GSE210817	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	571	BEDGRAPH FPKM_TRACKING WIG	Xiao Ge	Oct 31, 2023
GSE225257	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation [4C-seq]	Other	Homo sapiens Mus musculus	248	BEDGRAPH TXT	Xiao Ge	Oct 31, 2023
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE218127	U1 snRNP increases RNA Pol II elongation rate to enable synthesis of long genes [TT-Seq]	Other	Homo sapiens Mus musculus	10	BEDGRAPH	Claudia A Mimoso	Mar 24, 2023
GSE218128	U1 snRNP increases RNA Pol II elongation rate to enable synthesis of long genes [PRO-seq]	Other	Homo sapiens Mus musculus	10	BEDGRAPH	Claudia A Mimoso	Mar 24, 2023
GSE226164	The AAV capsid can influence the epigenetic marking of rAAV delivered episomal genomes in a species dependent manner [Tn5_InVitro]	Other	Homo sapiens Mus musculus	18	BEDGRAPH	Katja Pekrun	Feb 28, 2023
GSE226268	The AAV capsid can influence the epigenetic marking of rAAV delivered episomal genomes in a species dependent manner	Other	Homo sapiens Mus musculus	342	BEDGRAPH	Katja Pekrun	Feb 28, 2023
GSE197404	Combinatorial effects on gene expression at the Lbx1/Fgf8 locus resolve Split-Hand/Foot Malformation type 3	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	44	BEDGRAPH WIG	Giulia Cova	Feb 22, 2023
GSE169121	Tcf1 is essential for initiation of oncogenic Notch1-driven chromatin topology.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	61	BEDGRAPH BEDPE HIC TXT	Nadine Fournier	Jan 21, 2022
GSE158506	Fat1 deletion promotes hybrid EMT state with enhanced tumor progression, stemness, and metastasis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	62	BEDGRAPH TXT VCF	Yura Song	Dec 04, 2020
GSE130119	MAFG-driven astrocytes promote CNS inflammation	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	163	BEDGRAPH CSV TXT	Michael Wheeler	Feb 12, 2020