GEO Browser - GEO

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31 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other	Homo sapiens		BED
GSE226204	Neurological Cockayne Syndrome Results from R-Loops Induced by Stalled RNA Polymerase II during Transcription Elongation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	37	BED BW NARROWPEAK TXT	Xiang-Dong Fu	Jul 29, 2024
GSE240014	An in situ method for identification of transcriptome-wide protein-RNA interactions in cells [in_situ_STAMP]	Other	Homo sapiens Mus musculus	39	BED TSV	Brian Yee	Jun 13, 2024
GSE240326	An in situ method for identification of transcriptome-wide protein-RNA interactions in cells	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	78	BED BW TSV	Brian Yee	Jun 13, 2024
GSE218716	EZH2 gain-of-function mutations distort H3K27me3 landscapes and transform transcriptional responses to PRC2 inhibition [ChIP-Seq/Cut&Run-Seq]	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	156	BED BW	Laia Richart	Mar 06, 2024
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE218274	PAX3-FOXO1 expression in endothelial progenitors dictates myogenic reprogramming and rhabdomyosarcoma identity	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	75	BED BW HIC TAR TDF TXT	Hongjian Jin	Sep 29, 2023
GSE221345	Cdc73 protects Notch-induced T-cell leukemia cells from DNA damage and mitochondrial stress	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	76	BED BIGWIG NARROWPEAK TXT	Brian Magnuson	Aug 29, 2023
GSE197060	Development of nanoRibo-seq enables study of regulated translation by cortical neuron subtypes, showing uORF translation in synaptic-axonal genes	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	45	BED CSV TXT	John Edward Froberg	Aug 25, 2023
GSE213597	ETV6 Represses Inflammatory Response Genes and Regulates HSPC Function During Stress Hematopoiesis in Mice	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BED BW HIC MTX TBI TSV	Kim Nichols	Aug 24, 2023
GSE221427	Epigenetic and transcriptomic alterations in key inflammatory pathways are established in RUNX1 deficient hematopoietic progenitors and are propagated to neutrophils.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	55	BED BW MATRIX	Alexandra Zezulin	Jul 12, 2023
GSE232181	Transcription factors interact with RNA to regulate genes	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	12	BED	Richard A Young	Jul 03, 2023
GSE211178	The hyperconnected 3D clique at the Ets1 locus is required for T cell function	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	67	BED HIC TSV	Golnaz Vahedi	Jun 20, 2023
GSE220621	Dynamic Patterns of Mammalian Mitochondrial DNA Replication Uncovered Using SSiNGLe-5′ES	Other	Homo sapiens Mus musculus	20	BED	Dongyang Xu	Jun 14, 2023
GSE207163	Transcriptional repression by a secondary DNA binding surface of DNA topoisomerase I safeguards against hypertranscription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	62	BED BW RESULTS TXT XLSX	Zhenhua hu	May 29, 2023
GSE199007	SATB1 Regulates 3D Genome Architecture in T cells by Constraining Chromatin Interactions surrounding CTCF-binding sites	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	36	BED BW COOL TXT	bao wang	Mar 05, 2023
GSE190955	Complex Genomic Patterns of Abasic Sites in Mammalian DNA Revealed by High-Resolution SSiNGLe-AP Method	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	271	BED FA TXT SRA Run Selector	Huifen Cao	Sep 15, 2022
GSE190324	RBM45 is an m6A-binding protein that affects neuronal differentiation and the splicing of a subset of pre-mRNAs	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	104	BED BW MATRIX	Kate Meyer	Aug 30, 2022
GSE198250	High depth profiling of miRNA targets with chimeric eCLIP [eCLIPseq]	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	188	BED BW TSV	Gene Yeo	Jul 30, 2022
GSE198251	High depth profiling of miRNA targets with chimeric eCLIP	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	204	BED BW TSV	Gene Yeo	Jul 29, 2022
GSE174554	A single cell atlas of human glioma under therapy	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	113	BED MTX TAR TSV TXT ZIP	Aaron Diaz	Jul 05, 2022