GEO Browser - GEO

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33 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other	Homo sapiens		BED
GSE120409	A neutropenia-associated transcription factor mutation differentially impacts target genes in the cell-states traversed during granulocyte specification and commitment	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	833	BED H5 TXT	H. Leighton Grimes	Apr 06, 2020
GSE174554	A single cell atlas of human glioma under therapy	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	113	BED MTX TAR TSV TXT ZIP	Aaron Diaz	Jul 05, 2022
GSE114981	Activation of HOTTIP lncRNA perturbs HSC function leading to AML like disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	66	BED TXT SRA Run Selector	Suming Huang	Dec 03, 2019
GSE240326	An in situ method for identification of transcriptome-wide protein-RNA interactions in cells	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	78	BED BW TSV	Brian Yee	Jun 13, 2024
GSE240014	An in situ method for identification of transcriptome-wide protein-RNA interactions in cells [in_situ_STAMP]	Other	Homo sapiens Mus musculus	39	BED TSV	Brian Yee	Jun 13, 2024
GSE162739	BAP1 activity regulates Polycomb occupancy and global chromatin condensation counteracting diffuse PCGF3/5-dependent H2AK119ub1 deposition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	192	BED RPKM TSV TXT SRA Run Selector	Federico Rossi	Jun 27, 2021
GSE221345	Cdc73 protects Notch-induced T-cell leukemia cells from DNA damage and mitochondrial stress	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	76	BED BIGWIG NARROWPEAK TXT	Brian Magnuson	Aug 29, 2023
GSE131583	Combined Cohesin-Runx1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	123	BED	Yotaro Ochi	Apr 07, 2020
GSE190955	Complex Genomic Patterns of Abasic Sites in Mammalian DNA Revealed by High-Resolution SSiNGLe-AP Method	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	271	BED FA TXT SRA Run Selector	Huifen Cao	Sep 15, 2022
GSE197060	Development of nanoRibo-seq enables study of regulated translation by cortical neuron subtypes, showing uORF translation in synaptic-axonal genes	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	45	BED CSV TXT	John Edward Froberg	Aug 25, 2023
GSE220621	Dynamic Patterns of Mammalian Mitochondrial DNA Replication Uncovered Using SSiNGLe-5′ES	Other	Homo sapiens Mus musculus	20	BED	Dongyang Xu	Jun 14, 2023
GSE213597	ETV6 Represses Inflammatory Response Genes and Regulates HSPC Function During Stress Hematopoiesis in Mice	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BED BW HIC MTX TBI TSV	Kim Nichols	Aug 24, 2023
GSE218716	EZH2 gain-of-function mutations distort H3K27me3 landscapes and transform transcriptional responses to PRC2 inhibition [ChIP-Seq/Cut&Run-Seq]	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	156	BED BW	Laia Richart	Mar 06, 2024
GSE221427	Epigenetic and transcriptomic alterations in key inflammatory pathways are established in RUNX1 deficient hematopoietic progenitors and are propagated to neutrophils.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	55	BED BW MATRIX	Alexandra Zezulin	Jul 12, 2023
GSE164997	Genome-wide determinants of Tn5 insertion preference	Other	Homo sapiens Mus musculus	8	BED SRA Run Selector	Kuangyu Yen	Oct 01, 2021
GSE165049	HOTTIP reinforces CTCF-defined TAD boundaries by forming R-loops to drive Wnt/b-catenin target gene expression in AML leukemogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	51	BED H5 MTX TSV TXT SRA Run Selector	Suming Huang	Feb 18, 2022
GSE115096	HOXBLINC is aberrantly expressed in acute myeloid leukemia and functions as a potent oncogenic long non-coding RNA in leukemogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	40	BED TXT SRA Run Selector	Suming Huang	Jan 27, 2021
GSE137764	High Resolution Repli-Seq defines the temporal choreography of initiation, elongation and termination of replication in mammalian cells	Other	Homo sapiens Mus musculus	85	BED MAT SRA Run Selector	David M Gilbert	Sep 20, 2019
GSE198251	High depth profiling of miRNA targets with chimeric eCLIP	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	204	BED BW TSV	Gene Yeo	Jul 29, 2022
GSE198250	High depth profiling of miRNA targets with chimeric eCLIP [eCLIPseq]	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	188	BED BW TSV	Gene Yeo	Jul 30, 2022