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14 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Other	Gallus gallus			BED
GSE161378	DBX2 REGULATION IN LIMBS SUGGESTS INTER-TAD SHARING OF ENHANCERS [HiC reanalysis]	Other Third-party reanalysis	Gallus gallus Mus musculus			BED COOL TXT	Lucille Lopez-Delisle	Jan 23, 2021
GSE194423	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds [Hi-C]	Other	Gallus gallus Mus musculus	2		BED COOL TXT	Aurelie Hintermann	Jun 20, 2022
GSE180441	GM-free immortalization and high yield production of cultured chicken [WGS]	Other	Gallus gallus	5		BED SRA Run Selector	Avner Ehrlich	Mar 22, 2023
GSE167064	Dynamic transcriptome and chromatin architecture in granulosa cells during chicken folliculogenesis	Other	Gallus gallus	6		BED HIC TXT XLSX SRA Run Selector	hua kui	Nov 10, 2021
GSE51939	Clustering of CpG islands constitutes an important determinant of the interphase chromosome 3D organization	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus	10		BED BEDGRAPH	Artem V Artemov	Mar 01, 2014
GSE166240	Transcriptome-wide N6-methyladenosine modification profiling of long non-coding RNAs and circular RNA during growth of Marek’s disease virus in vitro	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Gallus gallus	12		BED XLSX SRA Run Selector	ZHU Xiaojing Xiaojing ZHU	Apr 28, 2021
GSE153566	Clustering of strong replicators associated with active promoters is sufficient to establish an early-replicating domain	Other	Gallus gallus	13		BED FA MCOOL TXT SRA Run Selector	Caroline Brossas	Sep 07, 2020
GSE231492	Dimeric G-quadruplex motifs-induced NFRs determine strong replication origins in vertebrates	Third-party reanalysis Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Homo sapiens Mus musculus	14		BED BIGWIG NARROWPEAK	Caroline Tonnerre-Doncarli	Jul 19, 2023
GSE167579	Comparative 3D Genome Architecture in Vertebrates (Hi-C)	Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus	25		BED HDF5 XLS SRA Run Selector	Mengnan He	Apr 12, 2022
GSE195592	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Mus musculus	46		BED BEDGRAPH BIGWIG BW COOL NARROWPEAK TXT	Aurelie Hintermann	Jun 20, 2022
GSE167581	Comparative 3D Genome Architecture in Vertebrates	Expression profiling by high throughput sequencing Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	54		BED HDF5 XLS	Mengnan He	Apr 12, 2022
GSE44690	An Ancient Transcription Factor Initiates the Burst of piRNA Production During Early Meiosis in Mouse Testes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Gallus gallus Mus musculus	56		BED	Christian Roy	Mar 26, 2013
GSE115563	Similarities and differences in the regulation of HoxD genes during chick and mouse limb development.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Mus musculus	64		BED BEDGRAPH TXT	Nayuta Yakushiji-Kaminatsui	Nov 27, 2018
GSE121527	Reconstruction of the global neural crest gene regulatory network in vivo	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Gallus gallus	213		BED MTX TSV TXT	Tatjana Sauka-Spengler	Oct 09, 2019