16 series
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Accession Title Series type(s) Organism(s) Samples GDS Supplementary Contact Release date
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GSE47644
Conservation and divergence of regulatory strategies and the origin of tetrapod digits
  • Other
32 Marion LELEU Jan 21, 2014
GSE52830
Obesity-associated variants within FTO form long-range functional connections with IRX3
  • Other
6 Juan J. Tena Feb 24, 2014
GSE61063
Chromatin structure dynamics of hoxa13a, hoxa13b and hoxd13a loci during zebrafish development.
  • Other
  • Link icon Danio rerio
9 Juan J. Tena Jan 06, 2015
GSE66900
Evolutionary comparison reveals that diverging CCCTC-binding factor (CTCF) sites are signatures of ancestral topological associating domains borders
  • Other
63 Carlos Gómez May 18, 2015
GSE68737
A single 3D chromatin compartment in amphioxus Hox cluster suggests a stepwise evolutionary origin for vertebrate Hox bimodal regulatory topologies
74 Juan J. Tena Dec 16, 2015
GSE109219
The evolutionary emergence of the rac3b/rfng/sgca regulatory cluster refined mechanisms for hindbrain boundaries formation
  • Link icon Danio rerio
4 Juan J. Tena Apr 25, 2018
GSE110582
Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq
  • Other
24 Giovanni Marsico Aug 01, 2018
GSE115945
Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [4C-seq]
  • Other
  • Link icon Danio rerio
83 Juan J. Tena Aug 15, 2018
GSE123105
Selective roles of vertebrate PCF11 in premature and full-length transcript termination
95 Kinga Kamieniarz-Gdula Feb 25, 2019
GSE136554
Ancient genomic regulatory blocks are a major source for gene deserts in vertebrates after whole genome duplications
  • Other
12 Rafael Domínguez Acemel Mar 23, 2021
GSE144040
Global promoter usage in the differentfractions of the cell during early zebrafish development
  • Other
  • Link icon Danio rerio
12 Sanjana Pillay Mar 30, 2021
GSE156098
CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression [UMI-4C]
  • Other
  • Link icon Danio rerio
36 José M. Santos-Pereira Aug 02, 2021
GSE156099
CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression
  • Link icon Danio rerio
78 José M. Santos-Pereira Aug 02, 2021
GSE185283
Time-resolved RNA sequencing reveals distinct post-transcriptional regimes during zebrafish embryogenesis
72 Stefan Ludwig Ameres Dec 31, 2022
GSE233698
Rewiring of the epigenome and chromatin architecture by exogenously induced retinoic acid signaling during zebrafish embryonic development
  • Link icon Danio rerio
62 José M. Santos-Pereira Jun 13, 2023
GSE249369
Rewiring of the epigenome and chromatin architecture by exogenously induced retinoic acid signaling during zebrafish embryonic development [4C-Seq]
  • Other
  • Link icon Danio rerio
8
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José M. Santos-Pereira Dec 10, 2023