GEO Browser - GEO

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131 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Danio rerio
GSE273764	Long-range Atoh1 enhancers maintain competency for hair cell regeneration in the inner ear	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Anolis carolinensis Danio rerio	4	BIGWIG H5 TBI TSV	Tuo Shi	Nov 27, 2024
GSE110582	Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq	Other	Arabidopsis thaliana Caenorhabditis elegans Cereibacter sphaeroides Danio rerio Drosophila melanogaster Escherichia coli Homo sapiens Leishmania major Mus musculus Plasmodium falciparum Saccharomyces cerevisiae Trypanosoma brucei	24	BED BEDGRAPH SRA Run Selector	Giovanni Marsico	Aug 01, 2018
GSE183453	R-loop landscapes during parental-to-zygotic transition in zebrafish	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana Danio rerio Escherichia coli synthetic construct	60	BW SRA Run Selector	li kuan	May 29, 2024
GSE167579	Comparative 3D Genome Architecture in Vertebrates (Hi-C)	Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus	25	BED HDF5 XLS SRA Run Selector	Mengnan He	Apr 12, 2022
GSE167581	Comparative 3D Genome Architecture in Vertebrates	Expression profiling by high throughput sequencing Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	54	BED HDF5 XLS	Mengnan He	Apr 12, 2022
GSE68737	A single 3D chromatin compartment in amphioxus Hox cluster suggests a stepwise evolutionary origin for vertebrate Hox bimodal regulatory topologies	Other Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio	74	BEDGRAPH BW FA SRA Run Selector	Juan J. Tena	Dec 16, 2015
GSE136554	Ancient genomic regulatory blocks are a major source for gene deserts in vertebrates after whole genome duplications	Other	Branchiostoma lanceolatum Danio rerio Mus musculus	12	BEDGRAPH SRA Run Selector	Rafael Domínguez Acemel	Mar 23, 2021
GSE188331	Base-resolution DNA hydroxymethylation maps of purple sea urchin (Strongylocentrotus purpuratus), european lancelet (Branchiostoma lanceolatum) and zebrafish (Danio rerio) using ACE-seq	Other	Branchiostoma lanceolatum Danio rerio Strongylocentrotus purpuratus	15	BED SRA Run Selector	Ksenia Skvortsova	Nov 08, 2021
GSE188334	Base-resolution 5-hydroxymethylcytosine maps of sea urchin and lancelet embryos and adult tissues	Methylation profiling by high throughput sequencing Other	Branchiostoma lanceolatum Danio rerio Strongylocentrotus purpuratus	31	BED BW	Ksenia Skvortsova	Nov 08, 2021
GSE196043	mRNA aging shapes the Cap2 methylome in mammalian mRNA	Other Expression profiling by high throughput sequencing	Caenorhabditis elegans Danio rerio Drosophila melanogaster Homo sapiens Mus musculus	95	XLSX	Vladimir Despic	Dec 12, 2022
GSE271258	ac4C transcriptomes of Zebrafish and Worm	Expression profiling by high throughput sequencing Other	Caenorhabditis elegans Danio rerio	4	CSV	lele Yang	Jan 07, 2025
GSE200470	Divergent composition and transposon-silencing activity of small RNAs in mammalian oocytes	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Canis lupus familiaris Capra hircus Cavia porcellus Cricetulus griseus Danio rerio Homo sapiens Macaca fascicularis Mesocricetus auratus Mus musculus Oryctolagus cuniculus Rattus norvegicus Sus scrofa domesticus	138		Wei Liu	Mar 06, 2024
GSE6694	Zebrafish Paired End DiTag libraries	Other	Danio rerio	5		Chia Lin Wei	Dec 01, 2008
GSE22068	Expanding the MicroRNA Targeting Code: A Novel Type of Site with Centered Pairing	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Danio rerio Homo sapiens	11	TXT SRA Run Selector	Jin-Wu Nam	Jun 25, 2010
GSE23762	Off-Target Analysis of Zinc Finger Nucleases	Other Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	21	TXT SRA Run Selector	Scot Wolfe	Aug 25, 2010
GSE38125	Transcriptomic profiles of zebrafish embryos exposed to silver (nanoparticles, bulk and ions) using HT-SuperSAGE in a Illumina GA2 platform	Other	Danio rerio	8	TXT SRA Run Selector	Ronny van Aerle	Jun 17, 2013
GSE44269	Canonical Nucleosome Organization at Promoters Forms During Genome Activation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Danio rerio	12	TXT WIG SRA Run Selector	Yong Zhang	Oct 18, 2013
GSE47558	Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition	Expression profiling by high throughput sequencing Other	Danio rerio	35	TXT SRA Run Selector	Antonio J. Giraldez	Sep 22, 2013
GSE47644	Conservation and divergence of regulatory strategies and the origin of tetrapod digits	Other	Danio rerio Mus musculus	32	BEDGRAPH SRA Run Selector	Marion LELEU	Jan 21, 2014
GSE52830	Obesity-associated variants within FTO form long-range functional connections with IRX3	Other	Danio rerio Mus musculus	6	BEDGRAPH SRA Run Selector	Juan J. Tena	Feb 24, 2014