An integrated 5'- and 3'-end RNA sequencing platform for high-throughput transcriptome quantitation and annotation

Domain ChIRP reveals the modularity of long noncoding RNA architecture, function, and target genes

ChIP-nexus: a novel ChIP-exo protocol for improved detection of in vivo transcription factor binding footprints

High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila

SR proteins control a complex network of RNA-processing events

iCLIP seq reveals distribution of genome-wide SR protein-RNA binding

PAF1, a molecular regulator of promoter-proximal pausing by RNA Polymerase II

Polytene underreplication

m6A controls neurogenesis and sex determination in Drosophila via its nuclear reader protein YT521-B [MeRIP-Seq, S2R+ cells]

m6A controls neurogenesis and sex determination in Drosophila via its nuclear reader protein YT521-B

Widespread transcriptional pausing and elongation control at enhancers

Piwi interacts with chromatin at nuclear pores and promiscuously binds nuclear transcripts in Drosophila ovarian somatic cells

Transcriptional and chromatin changes accompanying de novo formation of transgenic piRNA clusters

Evolutionary Principles Predict 3D Chromatin Organization

Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity

A heterochromatin-dependent transcription machinery drives piRNA expression

Genome-wide regulatory architecture maps using ATAC-seq, H3K4me2 ChIP-seq, and PEAT in Drosophila S2 cells and ATAC-seq in whole worms

Herpes Simplex Virus 1 dramatically alters loading and positioning of RNA Polymerase II on host genes early in infection

DRB-4SU seq of Ctrl and Mago condition in 2 replicates with fragmentation [Promoter-proximal pausing mediated by the exon junction complex regulates splicing]

Targeting Processive Transcription Elongation via SEC Disruption for MYC-Induced Cancer Therapy