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15 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Other	Escherichia coli			BEDGRAPH
GSE153497	RNA degradation analysis reveals ribosome dynamics in complex microbiome samples	Other	Alistipes finegoldii Bacillus amyloliquefaciens Bacillus subtilis Caulobacter vibrioides Cryptococcus neoformans Enterococcus faecalis Escherichia coli Hoylesella timonensis Lactiplantibacillus plantarum Limosilactobacillus fermentum Limosilactobacillus reuteri Listeria monocytogenes Parabacteroides merdae Saccharomyces cerevisiae Salmonella enterica Segatella copri Staphylococcus aureus Synechocystis sp. PCC 6803 compost metagenome human feces metagenome	199		BEDGRAPH TXT XLSX SRA Run Selector	Vicent Pelechano	Mar 24, 2023
GSE110582	Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq	Other	Arabidopsis thaliana Caenorhabditis elegans Cereibacter sphaeroides Danio rerio Drosophila melanogaster Escherichia coli Homo sapiens Leishmania major Mus musculus Plasmodium falciparum Saccharomyces cerevisiae Trypanosoma brucei	24		BED BEDGRAPH SRA Run Selector	Giovanni Marsico	Aug 01, 2018
GSE51361	High resolution mapping of modified nucleobases in DNA using excision repair enzymes	Other	Escherichia coli Saccharomyces cerevisiae	11		BEDGRAPH SRA Run Selector	Jay R. Hesselberth	May 15, 2014
GSE77184	RecG Directs DNA Synthesis During Double-Strand Break Repair	Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli	27		BEDGRAPH	Benura Azeroglu	May 19, 2016
GSE88725	Global analysis of translation termination in E. coli using release factor manipulations	Expression profiling by high throughput sequencing Other	Escherichia coli	30		BEDGRAPH SRA Run Selector	Natalie Baggett	Mar 09, 2017
GSE95567	In vivo probing of nascent RNA structures reveals principles of cotranscriptional folding	Expression profiling by high throughput sequencing Other	Escherichia coli	10		BEDGRAPH TAR SRA Run Selector	Danny Incarnato	Jul 19, 2017
GSE119094	Single-nucleotide-resolution sequencing of human N6-methyldeoxyadenosine reveals strand-asymmetric clusters associated with SSBP1 in the mitochondrial genome	Other	Escherichia coli Homo sapiens Salmonella enterica subsp. enterica serovar Typhimurium	11		BED BEDGRAPH SRA Run Selector	Wee Siong Sho Goh	Nov 09, 2018
GSE148594	pAgo-induced DNA interference protects bacteria from invader DNA [gDNA]	Other	Escherichia coli	18		BEDGRAPH SRA Run Selector	Anton Kuzmenko	Jul 30, 2020
GSE148595	pAgo-induced DNA interference protects bacteria from invader DNA [smDNA]	Other	Escherichia coli	26		BEDGRAPH TSV SRA Run Selector	Anton Kuzmenko	Jul 30, 2020
GSE148596	pAgo-induced DNA interference protects bacteria from invader DNA	Other	Escherichia coli	36		BEDGRAPH TSV	Anton Kuzmenko	Jul 30, 2020
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36		BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE158570	Genome-wide tracking of Escherichia coli DNA polymerase V to the lagging strand during the SOS response	Other	Escherichia coli	51		BEDGRAPH SRA Run Selector	Anders R. Clausen	Mar 22, 2021
GSE159312	Characterization of Bacterial Transcriptional Regulatory Networks in Escherichia coli through Genome-Wide In Vitro Run-Off Transcription/RNA-seq (ROSE)	Expression profiling by high throughput sequencing Other	Escherichia coli	10		BEDGRAPH XLS SRA Run Selector	David Brandt	May 31, 2023
GSE168010	A programmable pAgo nuclease with universal guide and target specificity from the mesophilic bacterium Kurthia massiliensis	Other	Escherichia coli	2		BEDGRAPH SRA Run Selector	Anton Kuzmenko	Mar 02, 2021
GSE235661	Interrogation of RNA-protein interaction dynamics in bacterial growth	Other	Escherichia coli	8		BEDGRAPH	Mie Monti	May 08, 2024