Genome-Wide Analysis In Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

Comprehensive comparative analysis of strand-specific RNA sequencing methods

Native elongating transcript sequencing (NET-seq) of wild type Saccharomyces cerevisiae and of DST1, RCO1, SET1, SET2, EAF3 deletion strains

Ribosome profiling of wild-type and loc1- cells in S. cerevisiae

Roles for Transcript Leaders in Translation and mRNA Decay Revealed by Transcript Leader Sequencing

Genome-wide measurement of RNA folding energies

Ribosome profiling of whi3 mutant yeast

Evolution of Translation Regulation in budding Yeast

Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution

Ribosome profiling study of dom34 and hbs1 knockout strains using short (16-nt) and long (28-nt) monosome-protected footprints and disome-protected footprints

RiboMeth-seq: High-throughput mapping of ribose methylations in RNA at single-nucleotide resolution

Transcription Factor Regulation and Chromosome Dynamics in Pseudohyphal Growth

Ribosomal footprinting and RNASeq in two strains of yeast and their diploid hybrid

Pseudouridine profiling reveals widespread regulated mRNA pseudouridylation in yeast and human cells

Transcription profiling of a S96xSK1 yeast cross and its pool of spores.

Causal signals between codon bias, mRNA structure and the efficiency of translation and elongation

Glycolytic Enzymes Bind mRNA and Coalesce in G-bodies Essential for Cell Proliferation Under Hypoxic Conditions

Genome-wide analysis of translational efficiency reveals distinct but overlapping functions of yeast DEAD-box RNA helicases Ded1 and eIF4A

Transcriptome-wide identification and target analysis of the Pumilio family of RNA binding proteins

Identification of New Branch Points and Unconventional Introns in Saccharomyces cerevisiae