GEO Browser - GEO

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102 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Rattus norvegicus
GSE163620	The conservation and divergence of epigenitic reprogramming during mammalian early development	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus Rattus norvegicus Sus scrofa	188	BW TXT SRA Run Selector	Wei Xie	Nov 26, 2021
GSE167579	Comparative 3D Genome Architecture in Vertebrates (Hi-C)	Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus	25	BED HDF5 XLS SRA Run Selector	Mengnan He	Apr 12, 2022
GSE167581	Comparative 3D Genome Architecture in Vertebrates	Expression profiling by high throughput sequencing Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	54	BED HDF5 XLS	Mengnan He	Apr 12, 2022
GSE200470	Divergent composition and transposon-silencing activity of small RNAs in mammalian oocytes	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Canis lupus familiaris Capra hircus Cavia porcellus Cricetulus griseus Danio rerio Homo sapiens Macaca fascicularis Mesocricetus auratus Mus musculus Oryctolagus cuniculus Rattus norvegicus Sus scrofa domesticus	138		Wei Liu	Mar 06, 2024
GSE90720	Fox Family Protein Jumu Reads 6mA-DNA Codes and Contributes to Zygotic Gene Activation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Drosophila melanogaster Macaca mulatta Mus musculus Rattus norvegicus	22	BED TXT SRA Run Selector	Shunmin He	Jan 14, 2023
GSE17421	miRNA arrays for LPS-activated Akt1+/+ and Akt1-/- macrophages	Other	Homo sapiens Mus musculus Rattus norvegicus	4		Christos Tsatsanis	Aug 21, 2009
GSE20447	Neuronal microRNA response to Alzheimer's disease amyloid beta	Other	Homo sapiens Mus musculus Rattus norvegicus	1	TXT	Nicole Schonrock	May 30, 2010
GSE35320	microRNAs distinguish cytogenetic subgroups in pediatric AML and contribute to complex regulatory networks in AML-relevant pathways	Other Non-coding RNA profiling by array Expression profiling by array	Homo sapiens Mus musculus Rattus norvegicus synthetic construct	182	CEL GPR	Pablo Landgraf	Sep 11, 2013
GSE93676	Viral and Cellular N6-methyladenosine (m6A) Epitranscriptomes in KSHV Life Cycle	Expression profiling by high throughput sequencing Other	Homo sapiens Rattus norvegicus	72	BEDGRAPH FPKM_TRACKING SRA Run Selector	Hui Liu	Oct 31, 2017
GSE111134	A compendium of conserved cleavage and polyadenylation events in mammalian genes	Other	Homo sapiens Mus musculus Rattus norvegicus	128	TXT SRA Run Selector	Bin Tian	Aug 08, 2018
GSE141278	Transcription regulation of SNCA by dystonia type 6 gene product THAP1	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	37	BED BEDGRAPH BIGWIG TSV	Fubo Cheng	Sep 28, 2022
GSE161241	MiR-124 synergism with ELAVL3 enhances target gene expression to promote neuronal maturity	Other Expression profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	18	BIGWIG BW	Ya-Lin Lu	May 25, 2021
GSE162627	Merkel Cell Polyomavirus Encodes Circular RNAs (circRNAs) Enabling a Dynamic circRNA/microRNA/mRNA Regulatory Network	Other	Homo sapiens Rattus norvegicus	4	TXT SRA Run Selector	Bizunesh Abere	Dec 07, 2020
GSE167257	Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair [SAR-seq]	Other	Homo sapiens Mus musculus Rattus norvegicus	67	BED BW SRA Run Selector	Wei Wu	Mar 25, 2021
GSE167259	Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	109	BED BW	Wei Wu	Mar 25, 2021
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE198250	High depth profiling of miRNA targets with chimeric eCLIP [eCLIPseq]	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	188	BED BW TSV	Gene Yeo	Jul 30, 2022
GSE198251	High depth profiling of miRNA targets with chimeric eCLIP	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	204	BED BW TSV	Gene Yeo	Jul 29, 2022
GSE232344	CD4+ T cell	Expression profiling by high throughput sequencing Other	Homo sapiens Rattus norvegicus synthetic construct	47		Martin Kerschensteiner	Aug 01, 2023
GSE241243	MiR-148b-5p promotes hypercalciuric kidney stone formation via regulating circRNA-83536/miR-24-3p/Calcitonin Receptor signaling	Non-coding RNA profiling by high throughput sequencing Other	Homo sapiens Rattus norvegicus	25	TXT	Wei Zhu	Aug 25, 2023