GEO Browser - GEO

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103 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Rattus norvegicus
GSE90720	Fox Family Protein Jumu Reads 6mA-DNA Codes and Contributes to Zygotic Gene Activation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Drosophila melanogaster Macaca mulatta Mus musculus Rattus norvegicus	22	BED TXT SRA Run Selector	Shunmin He	Jan 14, 2023
GSE110652	Genome-wide map of proximity linkage to renin proximal promoter in rat	Other	Rattus norvegicus	6	BED BW SRA Run Selector	Mingyu Liang	Feb 14, 2019
GSE119170	m6A profile in cardiomyocytes	Other	Rattus norvegicus	10	BED SRA Run Selector	Federica Accornero	Aug 29, 2018
GSE127793	Characterization of Npas4 and heterodimer DNA binding in stimulated and silenced rat neurons	Other Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	24	BED BW TXT SRA Run Selector	Michael Hayes	Oct 02, 2019
GSE141278	Transcription regulation of SNCA by dystonia type 6 gene product THAP1	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	37	BED BEDGRAPH BIGWIG TSV	Fubo Cheng	Sep 28, 2022
GSE149561	The cytoplasmic SYNCRIP mRNA interactome of mammalian neurons	Expression profiling by high throughput sequencing Other	Rattus norvegicus	6	BED SRA Run Selector	Sharof Khudayberdiev	May 05, 2021
GSE167257	Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair [SAR-seq]	Other	Homo sapiens Mus musculus Rattus norvegicus	67	BED BW SRA Run Selector	Wei Wu	Mar 25, 2021
GSE167259	Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	109	BED BW	Wei Wu	Mar 25, 2021
GSE167579	Comparative 3D Genome Architecture in Vertebrates (Hi-C)	Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus	25	BED HDF5 XLS SRA Run Selector	Mengnan He	Apr 12, 2022
GSE167581	Comparative 3D Genome Architecture in Vertebrates	Expression profiling by high throughput sequencing Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	54	BED HDF5 XLS	Mengnan He	Apr 12, 2022
GSE178673	Chromatin landscape in perinatal cardiomyocytes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	28	BED BW GTF HIC SRA Run Selector	Zhang Jing	Feb 03, 2023
GSE184280	Deciphering the role of 3D genome organization in breast cancer susceptibility (Hi-C)	Other	Rattus norvegicus	6	BED TXT SRA Run Selector	Sushmita Roy	Jan 11, 2022
GSE193757	Glucocorticoid receptor-regulated enhancers play a central role in the gene regulatory networks underlying drug addiction	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Rattus norvegicus	36	BED CSV H5 HIC TSV TXT	Christopher Benner	May 11, 2022
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE198250	High depth profiling of miRNA targets with chimeric eCLIP [eCLIPseq]	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	188	BED BW TSV	Gene Yeo	Jul 30, 2022
GSE198251	High depth profiling of miRNA targets with chimeric eCLIP	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	204	BED BW TSV	Gene Yeo	Jul 29, 2022
GSE201625	Egr2 promoter antisense RNA as coordinator of chromatin remodeling and genome reorganization in Schwann cells [Hi-C]	Other	Rattus norvegicus	4	BED MATRIX	Jorge Eduardo Fajardo	Apr 14, 2023
GSE201627	Egr2 promoter antisense RNA as coordinator of chromatin remodeling and genome reorganization in Schwann cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Rattus norvegicus	12	BED MATRIX NARROWPEAK	Jorge Eduardo Fajardo	Apr 14, 2023
GSE93676	Viral and Cellular N6-methyladenosine (m6A) Epitranscriptomes in KSHV Life Cycle	Expression profiling by high throughput sequencing Other	Homo sapiens Rattus norvegicus	72	BEDGRAPH FPKM_TRACKING SRA Run Selector	Hui Liu	Oct 31, 2017
GSE184294	N6-methyladenosine RNA methylome analyses in cyclophosphamide-treated neonatal rat cardiac myocytes.	Other	Rattus norvegicus	8	BEDGRAPH SRA Run Selector	Min Zhu	Sep 23, 2021