GEO Browser - GEO

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126 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Mus musculus		TAR
GSE48763	Cohesin-based chromatin interactions enable regulated gene expression within pre-existing architectural compartments.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	13	BED TAR TXT SRA Run Selector	Andre J Faure	Aug 13, 2013
GSE59027	Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation	Other	Mus musculus	6	TAR SRA Run Selector	Josee Dostie	Dec 30, 2015
GSE72697	Structural organization of the inactive X chromosome	Expression profiling by high throughput sequencing Other Third-party reanalysis	Mus musculus	8	TAR TXT SRA Run Selector	Bryan R Lajoie	Jul 18, 2016
GSE84792	Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding [Capture-C]	Other	Mus musculus	16	TAR SRA Run Selector	Guillaume Andrey	Dec 06, 2016
GSE84795	Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	114	BW TAR	Guillaume Andrey	Dec 06, 2016
GSE96033	Genome-wide Mapping of Lamin B1 Reveals the Existence of Dynamic and Functional Euchromatin Lamin B1 Domains (eLADs) at the onset of the Epithelial to Mesenchymal Transition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	27	BED BEDGRAPH TAR TXT SRA Run Selector	Enrique Blanco	Aug 30, 2018
GSE96107	Multi-scale 3D genome rewiring during mouse neural development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	92	BW NARROWPEAK TAR TXT SRA Run Selector	Boyan Bonev	Oct 18, 2017
GSE97179	Single Cell Methylome Signatures Reveal Distinct Neuronal Populations and Regulatory Elements in the Mammalian Cortex	Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	6172	TAR SRA Run Selector	Joseph R Ecker	Aug 10, 2017
GSE99606	NG Capture-C analysis of GADD45a-bound adipogenic super-enhancers	Other	Mus musculus	12	TAR SRA Run Selector	Emil Karaulanov	Jun 11, 2018
GSE99607	Impaired DNA demethylation of C/EBP sites causes premature aging	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Expression profiling by array Other	Mus musculus	58	BW TAR TSV TXT	Emil Karaulanov	Jun 11, 2018
GSE101715	A TAD boundary at the HoxD locus segregates opposing limb regulatory landscapes and their target genes [Hi-C]	Other Third-party reanalysis	Mus musculus	6	MATRIX TAR TXT SRA Run Selector	Eddie Rodríguez-Carballo	Dec 22, 2017
GSE101717	A TAD boundary at the HoxD locus segregates opposing limb regulatory landscapes and their target genes	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	91	BEDGRAPH MATRIX NARROWPEAK TAR TXT	Eddie Rodríguez-Carballo	Dec 22, 2017
GSE119670	The expression of MHC class II molecules on murine breast tumors delays T cell exhaustion, expands the T cell repertoire and slows tumor growth	Other	Mus musculus	2	TAR SRA Run Selector	Dmytro Starenki	Sep 08, 2018
GSE130784	Ultra-High Throughput Single Cell Analysis of Proteins and RNAs by Split-pool Synthesis	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	24	TAR TXT SRA Run Selector	Maeve Ohuallachain	May 07, 2019
GSE134529	CRISPR/Cas9/AAV9-sgRNA Mediated In Vivo Genome Editing Reveals the Indispensability of Myc During Muscle Stem Cells Activation by Remodeling the 3D Chromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	51	BEDGRAPH FPKM_TRACKING TAR ZIP	Yingzhe Ding	Sep 16, 2021
GSE147239	Inter-chromosomal contacts of the 16p11.2 locus connect with gene expression changes of Pcdh genes in autism spectrum disorder	Expression profiling by high throughput sequencing Other	Mus musculus	34	TAR TSV SRA Run Selector	Ana Pombo	Mar 21, 2024
GSE150140	The healing myocardium mobilizes a distinct B-cell subset through a CXCL13-CXCR5-dependent mechanism	Expression profiling by high throughput sequencing Other	Mus musculus	1	CSV H5 TAR SRA Run Selector	Antoine-Emmanuel Saliba	May 29, 2021
GSE150858	Barcoded viral tracing of single-cell interactions in CNS inflammation	Other Expression profiling by high throughput sequencing	Mus musculus Suid alphaherpesvirus 1 unidentified plasmid	128	CSV TAR TSV TXT ZIP	Michael Wheeler	Apr 22, 2021
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE157871	CRISPR/Cas9/AAV9-sgRNA Mediated In Vivo Genome Editing Reveals the Indispensability of Myc During Muscle Stem Cells Activation by Remodeling the 3D Chromatin [DEEP-seq(MyoD&Myc&Bcl6&Pknox2)]	Other	Mus musculus	6	TAR SRA Run Selector	Yingzhe Ding	Oct 27, 2021