GEO Browser - GEO

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139 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Mus musculus		NARROWPEAK
GSE206875	A non-coding single nucleotide polymorphism at 8q24 drives IDH1-mutant glioma formation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	24	ZIP NARROWPEAK	Daniel Schramek	Sep 12, 2022
GSE173446	The 3D enhancer network of the developing T cell genome is controlled by SATB1 [Hi-C]	Other	Mus musculus	14	XLSX NARROWPEAK HIC BED SRA Run Selector	Tomas Zelenka	Sep 23, 2022
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	XLSX TXT TSV TAB NARROWPEAK MTX BW BEDGRAPH BED SRA Run Selector	Boyan Bonev	Apr 30, 2024
GSE219097	Cdc73 protects Notch-induced T-cell leukemia cells from DNA damage and mitochondrial stress [Bru-seq and BruUV-seq]	Other	Mus musculus	36	XLSX NARROWPEAK CSV BIGWIG BED	Brian Magnuson	Aug 30, 2023
GSE51341	Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence	Other	Homo sapiens Mus musculus	32	WIG TXT NARROWPEAK BROADPEAK BIGWIG BED BAM	ENCODE DCC	Nov 19, 2014
GSE81203	Polarized regulatory landscape and Wnt responsiveness underlie Hox activation in embryos	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	65	WIG NARROWPEAK BW BEDGRAPH SRA Run Selector	Jacqueline Deschamps	Sep 16, 2016
GSE166074	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis [Cut&Run IFNgvsCtr]	Other	Mus musculus	21	WIG NARROWPEAK BROADPEAK SRA Run Selector	Eneritz Agirre	Jan 28, 2022
GSE222972	Epigenomic analysis of regulatory evolution in mole rats	Genome binding/occupancy profiling by high throughput sequencing Other	Cavia porcellus Fukomys damarensis Heterocephalus glaber Mus musculus	160	WIG NARROWPEAK	Diego Villar	Aug 21, 2023
GSE51334	DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions	Other	Homo sapiens Mus musculus	993	TXT TSV PAIR NARROWPEAK BROADPEAK BIGWIG BED BAM	ENCODE DCC	Nov 20, 2014
GSE70226	rDNA chromatin interactions in the MYC-driven Eµ-Myc transgenic mouse model of B-cell lymphoma	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	25	TXT NARROWPEAK CSV	Jeannine Diesch	Feb 06, 2019
GSE76481	Cell-of-origin specific 3D genome structure acquired during somatic cell reprogramming	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by array	Mus musculus	85	TXT NARROWPEAK	Elzo de Wit	Mar 01, 2016
GSE85185	YY1 and CTCF Orchestrate a 3D Chromatin Looping Switch during Early Neural Lineage Commitment	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	16	TXT NARROWPEAK BED SRA Run Selector	Jennifer E Phillips-Cremins	May 22, 2017
GSE87548	Layer-specific ATAC-seq of the neurons of adult mouse visual cortex defined by Cre-driver lines	Other	Mus musculus	20	TXT NARROWPEAK BROADPEAK BED SRA Run Selector	Lucas T Gray	Jan 01, 2017
GSE96107	Multi-scale 3D genome rewiring during mouse neural development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	92	TXT TAR NARROWPEAK BW SRA Run Selector	Boyan Bonev	Oct 18, 2017
GSE97669	Promoter of lncRNA gene PVT1 is a tumor suppressor DNA element	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	267	TXT NARROWPEAK BW	Howard Y. Chang	May 31, 2018
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	TXT NARROWPEAK HIC BW BEDGRAPH BED SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE101717	A TAD boundary at the HoxD locus segregates opposing limb regulatory landscapes and their target genes	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	91	TXT TAR NARROWPEAK MATRIX BEDGRAPH	Eddie Rodríguez-Carballo	Dec 22, 2017
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	TXT NARROWPEAK HIC BIGWIG SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	TXT NARROWPEAK HIC FPKM_TRACKING BROADPEAK BIGWIG SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE122117	The role of beta-catenin signaling in regulating barrier vs. non-barrier gene expression programs in circumventricular organ and ocular vasculatures	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	52	TXT NARROWPEAK BW SRA Run Selector	Mark F Sabbagh	Mar 26, 2019