GEO Browser - GEO

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37 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Mus musculus		BROADPEAK
GSE51334	DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions	Other	Homo sapiens Mus musculus	993	BAM BED BIGWIG BROADPEAK NARROWPEAK PAIR TSV TXT	ENCODE DCC	Nov 20, 2014
GSE51341	Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence	Other	Homo sapiens Mus musculus	32	BAM BED BIGWIG BROADPEAK NARROWPEAK TXT WIG	ENCODE DCC	Nov 19, 2014
GSE80272	Active and inactive enhancers co-operate to exert localized and long-range control of gene regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	94	BED BEDGRAPH BROADPEAK BW TDF	Jane Skok	May 26, 2016
GSE87548	Layer-specific ATAC-seq of the neurons of adult mouse visual cortex defined by Cre-driver lines	Other	Mus musculus	20	BED BROADPEAK NARROWPEAK TXT SRA Run Selector	Lucas T Gray	Jan 01, 2017
GSE140363	Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	122	BED BEDGRAPH BROADPEAK BW CSV HIC NARROWPEAK SRA Run Selector	Nishana Mayilaadumveettil	Apr 14, 2020
GSE171749	SETDB1/NSD dependent H3K9me3/H3K36me3 dual heterochromatin maintains gene expression profiles by bookmarking poised enhancers	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	88	BED BROADPEAK BW HIC TXT SRA Run Selector	Amandine BARRAL	Jan 25, 2022
GSE211864	Probing cell identity hierarchies by fate titration and collision during direct reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	16	BED BIGWIG BROADPEAK H5 LOOM TSV	Bob Hersbach	Sep 16, 2022
GSE224489	Epigenetic data during proliferation and differentiation of C2C12 cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	28	BED BEDPE BIGWIG BROADPEAK BW TXT	Mingyang Hu	Feb 10, 2023
GSE265888	Dynamic Chromatin Boundaries of TCR Loci Coincide V(D)J recombination During T Cell Development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	79	BED BEDGRAPH BEDPE BROADPEAK BW CSV HIC MATRIX TXT	Hao bingtao	Apr 27, 2024
GSE51337	Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis	Other	Mus musculus	42	BEDGRAPH BIGWIG BROADPEAK CEL TXT	ENCODE DCC	Nov 14, 2014
GSE51338	Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis	Other	Mus musculus	81	BEDGRAPH BIGWIG BROADPEAK TXT WIG	ENCODE DCC	Nov 14, 2014
GSE124718	Resetting histone modifications during human parental-to-zygotic transition	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	42	BEDGRAPH BROADPEAK NARROWPEAK TXT SRA Run Selector	Wei Xie	Jul 05, 2019
GSE130270	Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	149	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	Sep 25, 2019
GSE142781	CTCF orchestrates long-range cohesin-driven V(D)J recombinational scanning	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	170	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	May 11, 2020
GSE199059	Chromatin jets define the properties of cohesin-driven in vivo loop extrusion	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BEDGRAPH BROADPEAK HIC NARROWPEAK	Ya Guo	Aug 15, 2022
GSE234699	SMYD5 is a regulator of the mild hypothermia response	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	127	BEDGRAPH BROADPEAK BW H5	Hans Tomas Bjornsson	Jul 26, 2024
GSE241440	XIST directly regulates X-linked and autosomal genes in naïve human pluripotent cells [RAP-seq_mouse]	Other	Mus musculus	11	BEDGRAPH BROADPEAK	Kathrin Plath	Dec 15, 2023
GSE241444	XIST directly regulates X-linked and autosomal genes in naïve human pluripotent cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	129	BEDGRAPH BROADPEAK	Kathrin Plath	Dec 13, 2023
GSE95804	The BET protein BRD2 cooperates with CTCF to enforce transcriptional and architectural boundaries	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	12	BIGWIG BROADPEAK	Gerd A Blobel	Mar 31, 2017
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	BIGWIG BROADPEAK FPKM_TRACKING HIC NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Jan 07, 2020