GEO Browser - GEO

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273 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other	Mus musculus		SRA Run Selector
GSE186346	Extensive sex differences in depression-linked variants functionally assayed in mouse brain [Hippocampus]	Expression profiling by high throughput sequencing Other	Adeno-associated virus 9 Mus musculus	25	TXT SRA Run Selector	Joseph Dougherty	Feb 10, 2023
GSE186347	Extensive sex differences in depression-linked variants functionally assayed in mouse brain [P0&P10]	Expression profiling by high throughput sequencing Other	Adeno-associated virus 9 Mus musculus	44	TXT SRA Run Selector	Joseph Dougherty	Feb 10, 2023
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE166155	KARR-seq reveals principles of high-order ribonucleoprotein structure assembly	Other	Drosophila melanogaster Homo sapiens Mus musculus Respiratory syncytial virus Vesicular stomatitis virus	67	PAIRS SRA Run Selector	Youzhi Cheng	Dec 06, 2023
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE211736	Joint epigenome profiling reveals cell-type-specific gene regulatory programs in human cortical organoids	Expression profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Mus musculus	27	BW FA PICKLE TAB TSV TXT SRA Run Selector	Boyan Bonev	Aug 23, 2023
GSE185768	Promoter repression and 3D-restructuring resolves divergent developmental gene expression in TADs [Hi-C]	Other	Gallus gallus Monodelphis domestica Mus musculus	6	HIC SRA Run Selector	Michael I Robson	Sep 29, 2022
GSE114981	Activation of HOTTIP lncRNA perturbs HSC function leading to AML like disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	66	BED TXT SRA Run Selector	Suming Huang	Dec 03, 2019
GSE115096	HOXBLINC is aberrantly expressed in acute myeloid leukemia and functions as a potent oncogenic long non-coding RNA in leukemogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	40	BED TXT SRA Run Selector	Suming Huang	Jan 27, 2021
GSE131580	Combined Cohesin-Runx1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes [Hi-C]	Other	Homo sapiens Mus musculus	16	BEDPE SRA Run Selector	Yotaro Ochi	Apr 07, 2020
GSE137764	High Resolution Repli-Seq defines the temporal choreography of initiation, elongation and termination of replication in mammalian cells	Other	Homo sapiens Mus musculus	85	BED MAT SRA Run Selector	David M Gilbert	Sep 20, 2019
GSE144281	Genetic interaction mapping and exon-resolution functional genomics with a hybrid Cas9-Cas12a platform	Other	Homo sapiens Mus musculus	14	FASTA TXT SRA Run Selector	Jason Moffat	Jan 28, 2020
GSE144336	Defining genome architecture at base-pair resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	40	BW SRA Run Selector	Peng Hua	Apr 16, 2021
GSE148448	Self-reporting transposons enable simultaneous readout of gene expression and transcription factor binding in single cells	Other	Homo sapiens Mus musculus	27	BAM CSV LOOM TSV TXT SRA Run Selector	Robi D Mitra	Jul 23, 2020
GSE148716	Tau aggregates are RNA-protein assemblies that mis-localize multiple nuclear speckle components	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	22	CSV TSV SRA Run Selector	Evan Lester	Apr 06, 2021
GSE149493	Optimized photochemistry and enzymology enable efficient analysis of RNA structures and interactions in cells	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	21	TXT SRA Run Selector	Minjie Zhang	Mar 04, 2021
GSE152020	Joint profiling of histone modifications and transcriptome in single cells from mouse brain	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	102	SRA Run Selector	Zhu Chenxu	Dec 15, 2020
GSE153651	m6A directs the demethylation of histone H3K9me2 co-transcriptionall	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	56	BED BW TXT SRA Run Selector	linjian xia	Jul 01, 2020
GSE154353	A single-cell method to map higher-order 3D genome organization in thousands of individual cells reveals structural heterogeneity in mouse ES cells	Other	Homo sapiens Mus musculus	3	TXT ZIP SRA Run Selector	Mary Villanueva Arrastia	Aug 12, 2020
GSE155844	PIE-Seq: Identifying RNA-binding Protein Targets by Dual RNA-deaminase Editing and Sequencing	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	66	TXT SRA Run Selector	Xiangbin Ruan	May 17, 2023