GEO Browser - GEO

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153 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other	Mus musculus		BED
GSE161676	Identifying non-genetic determinants of malignant clonal fitness at single cell resolution	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	synthetic construct Mus musculus	271	BED MTX SEG TSV VCF	Mark Dawson	Nov 08, 2021
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Rattus norvegicus Nomascus leucogenys Mus pahari Mus musculus Mus caroli Macaca mulatta Hylobates moloch Homo sapiens	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE198250	High depth profiling of miRNA targets with chimeric eCLIP [eCLIPseq]	Expression profiling by high throughput sequencing Other	Rattus norvegicus Mus musculus Homo sapiens	188	BED BW TSV	Gene Yeo	Jul 30, 2022
GSE198251	High depth profiling of miRNA targets with chimeric eCLIP	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Rattus norvegicus Mus musculus Homo sapiens	204	BED BW TSV	Gene Yeo	Jul 29, 2022
GSE199968	Comparative 3D Genome Architectures of Adipose Tissues Provide Insight into Human-specific Regulation of Metabolic Homeostasis	Other Expression profiling by high throughput sequencing	Ovis aries Mus musculus	20	BED HIC TXT XLS	jin long	Apr 25, 2023
GSE181236	Xist-seeded nucleation sites form local concentration gradients of silencing proteins to inactivate the X-chromosome	Other Expression profiling by high throughput sequencing	Mus musculus musculus x Mus musculus castaneus Mus musculus	47	BED BEDGRAPH MTX TSV	Kathrin Plath	Oct 26, 2021
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus Homo sapiens	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE114981	Activation of HOTTIP lncRNA perturbs HSC function leading to AML like disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Homo sapiens	66	BED TXT SRA Run Selector	Suming Huang	Dec 03, 2019
GSE115096	HOXBLINC is aberrantly expressed in acute myeloid leukemia and functions as a potent oncogenic long non-coding RNA in leukemogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Homo sapiens	40	BED TXT SRA Run Selector	Suming Huang	Jan 27, 2021
GSE120409	A neutropenia-associated transcription factor mutation differentially impacts target genes in the cell-states traversed during granulocyte specification and commitment	Expression profiling by high throughput sequencing Other	Mus musculus Homo sapiens	833	BED H5 TXT	H. Leighton Grimes	Apr 06, 2020
GSE123670	CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	187	BED BW HIC	ya wei song	Apr 05, 2022
GSE124463	Promoter capture Hi-C identifies long-range promoter contact dynamics in response to diet and the development of non-alcoholic fatty liver disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	46	BED BIGWIG TXT SRA Run Selector	Paul A Wade	Jan 01, 2020
GSE124596	A conserved noncoding locus modulates random monoallelic Xist expression across a TAD boundary	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	56	BED BEDGRAPH BW CSV TXT SRA Run Selector	Nicolas Servant	Dec 01, 2019
GSE126362	Pax3 cooperates with Ldb1 to direct local chromosome architecture during lineage specification	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	60	BED HIC SRA Run Selector	Alessandro Magli	Apr 16, 2019
GSE131583	Combined Cohesin-Runx1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Homo sapiens	123	BED	Yotaro Ochi	Apr 07, 2020
GSE137764	High Resolution Repli-Seq defines the temporal choreography of initiation, elongation and termination of replication in mammalian cells	Other	Mus musculus Homo sapiens	85	BED MAT SRA Run Selector	David M Gilbert	Sep 20, 2019
GSE140363	Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	122	BED BEDGRAPH BROADPEAK BW CSV HIC NARROWPEAK SRA Run Selector	Nishana Mayilaadumveettil	Apr 14, 2020
GSE141223	E2A Specifies Adaptive Immunity by Instructing Large-Scale Topological Changes	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	62	BED TXT SRA Run Selector	Kazuko Miyazaki	Jul 15, 2020
GSE141587	Transcriptomic and epigenetic disruptions in excitatory neurons in Dnmt3a conditional knockout mouse	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	49	BED BW TSV TXT SRA Run Selector	Joseph R Ecker	May 23, 2022
GSE143736	UTX constrains antiviral CD8+ T cell responses during chronic virus infection	Expression profiling by high throughput sequencing Other	Mus musculus	23	BED BW TXT SRA Run Selector	Joshua Starmer	Feb 09, 2021