GEO Browser - GEO

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416 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Other	Mus musculus		TXT
GSE135498	Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA	Other	Capsaspora owczarzaki Homo sapiens Mus musculus Nematostella vectensis Neurospora crassa Oryza sativa	40	BIGWIG BW TXT SRA Run Selector	Christopher Benner	Sep 16, 2019
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024
GSE202949	Measuring stress response upon tissue dissociation using SLAMseq in bulk and single cells	Expression profiling by high throughput sequencing Other	Danio rerio Mus musculus	30	MTX TSV TXT	Anika Neuschulz	Dec 20, 2022
GSE250267	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Danio rerio Mus musculus	34	BED BW COOL NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE151112	Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons	Other	Drosophila melanogaster Mus musculus Spodoptera frugiperda	24	FASTA TXT	Jonathan James Ipsaro	Feb 20, 2021
GSE185930	Distinct roles of CKM-Mediator in controlling Polycomb-dependent chromosomal interactions and priming genes for induction	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	148	TXT	Emilia Dimitrova	May 23, 2022
GSE120240	Massively Parallel Reporter Assay for pluripotency factors in mESCs	Expression profiling by high throughput sequencing Other	Escherichia coli Mus musculus	8	TXT SRA Run Selector	Dana M King	Sep 18, 2019
GSE165812	Information Content Differentiates Enhancers From Silencers in Mouse Photoreceptors	Other	Escherichia coli Mus musculus	16	TXT SRA Run Selector	Michael Aaron White	Jan 30, 2021
GSE195592	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Mus musculus	46	BED BEDGRAPH BIGWIG BW COOL NARROWPEAK TXT	Aurelie Hintermann	Jun 20, 2022
GSE111930	An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gorilla gorilla Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	60	BW HIC TDF TXT SRA Run Selector	Lei Tian	Aug 11, 2020
GSE63473	Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	203	BAM FASTA GTF TXT	Evan Macosko	May 20, 2015
GSE74353	RNA duplex map in living cells reveals higher order transcriptome structure	Other	Homo sapiens Mus musculus	14	TXT SRA Run Selector	Zhipeng Lu	Apr 04, 2016
GSE77328	OmoMYC blunts promoter invasion by oncogenic MYC to inhibit gene expression characteristic of MYC-dependent tumors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	44	TXT WIG SRA Run Selector	Martin Eilers	Oct 18, 2016
GSE77553	Capturing pairwise and multi-way chromosomal conformations using C-walks	Other	Homo sapiens Mus musculus	20	TXT SRA Run Selector	Pedro Olivares-Chauvet	Feb 04, 2016
GSE95374	Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	104	BW TXT SRA Run Selector	Nian Liu	Dec 06, 2017
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE99174	CAPTURE-3C-seq analysis of cis-element-mediated long-range DNA interactions	Other	Homo sapiens Mus musculus	75	TXT SRA Run Selector	Jian Xu	Aug 24, 2017
GSE100733	LRPPRC-mediated folding of the mitochondrial transcriptome	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	28	BED BEDGRAPH TXT	Stefan J Siira	Nov 21, 2017
GSE111134	A compendium of conserved cleavage and polyadenylation events in mammalian genes	Other	Homo sapiens Mus musculus Rattus norvegicus	128	TXT SRA Run Selector	Bin Tian	Aug 08, 2018