GEO Browser - GEO

Series

Samples

Platforms

DataSets

45 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Other	Mus musculus		NARROWPEAK
GSE194018	A role for the GATA transcription factor family in X-chromosome inactivation as direct potent Xist activators	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Synthetic plasmid	39	BW NARROWPEAK	Till Schwämmle	Jan 26, 2022
GSE205783	Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	170	BEDGRAPH BIGWIG COOL NARROWPEAK TXT	Lucille Lopez-Delisle	Apr 28, 2023
GSE211214	Identifying gene combinations for targeting innate immune cells to enhance T cells activation	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	81	BW NARROWPEAK TAR	Oren Parnas	Sep 13, 2023
GSE225972	Proteome-scale tagging and functional screening in mammalian cells by ORFtag	Expression profiling by high throughput sequencing Other	Mus musculus	28	BW NARROWPEAK TXT	Alexander Stark	May 10, 2024
GSE237974	A novel CRISPR/Cas9 screening platform identifies an IRF1-SOCS1-mediated negative feedback loop that limits CXCL9 expression and anti-tumor immunity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	56	NARROWPEAK	Kevin C sek	Jul 22, 2023
GSE240484	AgRP neuron epigenomes across hunger states reveal that IRF3 mediates leptin's effects	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	46	BED BW NARROWPEAK TSV	NORC Boston	Apr 12, 2024
GSE250267	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio Mus musculus	34	BED BW COOL NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE272483	CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Third-party reanalysis	Mus musculus	54	BW NARROWPEAK TAR	Lucille Lopez-Delisle	Jul 18, 2024
GSE81203	Polarized regulatory landscape and Wnt responsiveness underlie Hox activation in embryos	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	65	BEDGRAPH BW NARROWPEAK WIG SRA Run Selector	Jacqueline Deschamps	Sep 16, 2016
GSE85185	YY1 and CTCF Orchestrate a 3D Chromatin Looping Switch during Early Neural Lineage Commitment	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	16	BED NARROWPEAK TXT SRA Run Selector	Jennifer E Phillips-Cremins	May 22, 2017
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE123292	Satb1 integrates DNA sequence, shape, motif density and torsional stress to selectively bind a subset of putative targets in nucleosome-dense regions of the genome	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	20	BROADPEAK BW NARROWPEAK SRA Run Selector	Jan Liphardt	May 28, 2019
GSE129997	Re-configuration of Chromatin Structure During the Mitosis-G1 Phase Progression	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	75	BED BEDGRAPH BW NARROWPEAK TSV SRA Run Selector	Gerd A Blobel	Nov 27, 2019
GSE150279	Using Mouse Embryonic Fibroblast to test the pioneer factor activity of POU4F3	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	16	NARROWPEAK SRA Run Selector	Neil Segil	Jul 09, 2021
GSE150638	Muscle progenitor specification and myogenic differentiation are associated with changes in chromatin topology.	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	26	BIGWIG NARROWPEAK RDS TXT SRA Run Selector	Nan Zhang	Oct 31, 2020
GSE168251	CTCF and transcription orchestrate chromatin structure re-configuration after mitosis	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	44	BW COOL NARROWPEAK	Yemin Lan	Jun 17, 2021
GSE184471	Cell-type differential targeting of Setdb1 prevents aberrant CTCF binding, chromatin looping, and cis-regulatory interactions	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	44	BW HIC NARROWPEAK SRA Run Selector	Lut Fei Tam	Nov 01, 2023
GSE194114	Context-dependent enhancer function revealed by targeted inter-TAD relocation	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	34	BED BW COOL NARROWPEAK TXT	Lucille Lopez-Delisle	May 17, 2022
GSE195592	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Mus musculus	46	BED BEDGRAPH BIGWIG BW COOL NARROWPEAK TXT	Aurelie Hintermann	Jun 20, 2022
GSE200114	Dynamic promoter-enhancer contacts contribute to spatiotemporal gene expression during mouse fetal development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	70	BEDPE BIGWIG HIC NARROWPEAK	Ming Hu	Sep 02, 2024