GEO Browser - GEO

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1732 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			TSV
GSE41553	comprehensive chromatin interaction in TNF alpha stimulated HUVECs	Other	Homo sapiens	4	TSV SRA Run Selector	Takahide Kohro	Oct 13, 2012
GSE51334	DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions	Other	Homo sapiens Mus musculus	993	BAM BED BIGWIG BROADPEAK NARROWPEAK PAIR TSV TXT	ENCODE DCC	Nov 20, 2014
GSE52539	Global analysis of the nuclear processing of unspliced U12-type introns by the exosome	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Homo sapiens	6	TSV SRA Run Selector	Marco Savarese	May 26, 2014
GSE53499	LED, a long non-coding RNA activator of enhancer RNAs, is hypermethylated in human cancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	21	BED TSV WIG SRA Run Selector	Koos Rooijers	Mar 24, 2015
GSE55331	Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates (small RNA AGO-IP)	Other Non-coding RNA profiling by high throughput sequencing	Homo sapiens	2	GFF TSV WIG SRA Run Selector	Marvin Jens	Nov 20, 2014
GSE55333	Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens	34	GFF TSV TXT WIG	Marvin Jens	Nov 20, 2014
GSE56849	High resolution Hi-C analysis in S. pombe reveals fundamental elements of genome architecture	Genome variation profiling by genome tiling array Genome binding/occupancy profiling by genome tiling array Other	Schizosaccharomyces pombe	14	TSV TXT	Shiv Grewal	Oct 22, 2014
GSE57316	High resolution Hi-C analysis in S. pombe reveals fundamental elements of genome architecture (NGS)	Other	Schizosaccharomyces pombe	5	TSV TXT SRA Run Selector	Shiv Grewal	Oct 22, 2014
GSE61911	Glucocorticoid receptor and nuclear factor kappa-b affect 3D chromatin organization	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	68	BED TSV TXT WIG SRA Run Selector	Shuang-Yin Wang	Sep 30, 2015
GSE64332	Human DIS3 shapes the RNA polymerase II transcriptome degrading variety of unwanted transcripts.	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	17	BEDGRAPH GTF TSV SRA Run Selector	Andrzej Dziembowski	Aug 20, 2015
GSE65948	Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling	Other	Caenorhabditis elegans	8	TSV SRA Run Selector	Jieyi Xiong	Feb 12, 2018
GSE71831	Deletion of DXZ4 on the human inactive X chromosome eliminates superdomains and impairs gene silencing	Other Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	101	HIC PDF TSV TXT SRA Run Selector	Miriam Huntley	Jul 19, 2016
GSE74370	Phytophthora infestans Ago1 binds miRNA and sRNAs from effector genes and transposable elements (small RNA-Seq)	Non-coding RNA profiling by high throughput sequencing Other	Phytophthora infestans	11	TSV SRA Run Selector	Anna Åsman	Mar 17, 2016
GSE74716	SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	12	BED BEDGRAPH CSV TSV SRA Run Selector	Rasim Barutcu	Jun 02, 2016
GSE75070	RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	14	BED MATRIX TSV TXT SRA Run Selector	Rasim Barutcu	Aug 23, 2016
GSE75282	Phytophthora infestans Ago1 binds miRNA and sRNAs from effector genes and transposable elements	Other Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Phytophthora infestans	13	TSV TXT	Anna Åsman	Mar 17, 2016
GSE76930	A Streamlined Tethered Chromosome Conformation Capture Protocol	Other	Caenorhabditis elegans	8	TSV SRA Run Selector	Idan Gabdank	Jan 20, 2016
GSE79297	m6A controls neurogenesis and sex determination in Drosophila via its nuclear reader protein YT521-B	Expression profiling by high throughput sequencing Other	Drosophila melanogaster	43	BW TSV	Jean-Yves Roignant	Dec 07, 2016
GSE79338	The Glioma-Infiltrating T Cell Receptor Repertoire	Expression profiling by high throughput sequencing Other	Homo sapiens	75	TSV TXT SRA Run Selector	Peter A Sims	May 18, 2016
GSE79577	High throughput characterization of the m6A demethylase FTO by CLIP and RNAseq	Expression profiling by high throughput sequencing Other	Homo sapiens	12	CSV TSV SRA Run Selector	Marek Bartosovic	Aug 25, 2017