GEO Browser - GEO

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72 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			TDF
GSE77342	4C-seq data and Pho and Ph, H3K27me3 and Engrailed ChIP-seq data in wildtype and PRE-deleted third instar Drosophila larval brains and disks	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	35	TDF	sandip de	Apr 06, 2016
GSE157708	A Grad-seq resource of RNA and protein complexes of Pseudomonas aeruginosa including transcripts of phage ΦKZ	Expression profiling by high throughput sequencing Other	Phikzvirus phiKZ Pseudomonas aeruginosa PAO1	44	TDF SRA Run Selector	Jörg Vogel	Jan 06, 2021
GSE97541	A Unique B-cell Regulome links Notch to Downstream Oncogenic Pathways in Small B-cell Lymphoma	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	111	TDF TXT SRA Run Selector	Russell James Hubbard Ryan	Jun 03, 2018
GSE241476	A genetically engineered mouse model of NUT carcinoma (CUT&RUN)	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	55	TDF	Chris French	Oct 04, 2023
GSE94129	Accumulation of RNA on chromatin disrupts heterochromatic silencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Schizosaccharomyces pombe	70	TDF SRA Run Selector	Mario Halic	Apr 12, 2017
GSE80272	Active and inactive enhancers co-operate to exert localized and long-range control of gene regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	94	BED BEDGRAPH BROADPEAK BW TDF	Jane Skok	May 26, 2016
GSE80269	Active and inactive enhancers co-operate to exert localized and long-range control of gene regulation [ATAC-seq]	Other	Mus musculus	8	BED TDF SRA Run Selector	Jane Skok	May 26, 2016
GSE118912	Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	46	HIC TDF TXT	Jesse Engreitz	Oct 21, 2019
GSE111930	An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gorilla gorilla Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	60	BW HIC TDF TXT SRA Run Selector	Lei Tian	Aug 11, 2020
GSE126264	Bcor loss perturbs myeloid differentiation and promotes leukaemogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	47	BW NARROWPEAK TDF	Madison Kelly	Feb 07, 2019
GSE122549	CD94-CD56dim, CD94+CD56dim and CD94+CD56hi natural killer (NK) cell chromatin histone modification assay	Other	Homo sapiens	36	TDF SRA Run Selector	Alan G Derr	Dec 10, 2019
GSE141377	CDK12 and CDK13	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	124	BIGWIG BW CSV GFF TDF TSV	Zheng Fan	Apr 29, 2020
GSE163315	Characterization of genomic and chromatin landscape of RPE cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	62	BED BW CSV TDF TXT SRA Run Selector	Anna Gonzalez Manjon	Dec 17, 2020
GSE185725	Characterization of genomic rearrangements in RPE-1 cells with and without DSB in the ABCB1 promoter	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	11	TDF SRA Run Selector	Anna Gonzalez Manjon	Oct 15, 2021
GSE104334	Cohesin loss eliminates all loop domains	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	132	BW HIC TDF	Suhas Rao	Oct 05, 2017
GSE83860	Crosstalk between androgen and proinflammatory signaling activates a distinct transcription program in prostate cancer cells	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	46	BED TDF SRA Run Selector	Einari A Niskanen	Oct 05, 2016
GSE192893	CstF64 iCLIP-seq in control and U1 AMO-treated HeLa cells	Other	Homo sapiens	4	TDF	chengguo yao	Feb 27, 2023
GSE267400	Cut & Tag sequencing exhibited the chromosome binding regions of transcription factor IRF5 within murine bone marrow derived macrophages	Other	Mus musculus	8	TDF TXT	Zhejun Cai	May 20, 2024
GSE78172	DSBCapture: in situ capture and direct sequencing of dsDNA breaks	Other Expression profiling by high throughput sequencing	Homo sapiens	11	BED BEDGRAPH NARROWPEAK TDF TXT SRA Run Selector	Giovanni Marsico	Jul 18, 2016
GSE153811	Determining miR-221/222-3p targets in B cells activated with aCD40 IL4 IL21 in vitro	Expression profiling by high throughput sequencing Other	Mus musculus	16	BED TDF TXT SRA Run Selector	Eric Joseph Wigton	Jan 01, 2021