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289 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			TAR
GSE18215	High throughput sequencing of mutants in the WAGO pathway	Non-coding RNA profiling by high throughput sequencing Other	Caenorhabditis elegans	18	GFF TAR SRA Run Selector	Craig Mello	Oct 01, 2009
GSE18231	WAGO pathway	Non-coding RNA profiling by genome tiling array Non-coding RNA profiling by high throughput sequencing Other	Caenorhabditis elegans	20	BAR CEL GFF TAR	Craig Mello	Oct 01, 2009
GSE18806	Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway	Non-coding RNA profiling by high throughput sequencing Other	Drosophila melanogaster	11	TAR TXT SRA Run Selector	Jia Xu	Oct 31, 2009
GSE25312	High-througput Bacteria one hybrid (B1H) selections for all Drosophila homeodomain proteins	Other	Drosophila melanogaster	128	TAR TXT	Scot Wolfe	Nov 13, 2010
GSE39505	Chromatin Interactions by 5C from ENCODE/University of Washington	Other	Homo sapiens	9	TAR TXT SRA Run Selector	ENCODE DCC	Jul 19, 2012
GSE40696	Quantitative, genome-wide analysis of eukaryotic replication initiation and termination	Other	Saccharomyces cerevisiae	5	SGR TAB TAR SRA Run Selector	Iestyn Whitehouse	Feb 28, 2013
GSE48763	Cohesin-based chromatin interactions enable regulated gene expression within pre-existing architectural compartments.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	13	BED TAR TXT SRA Run Selector	Andre J Faure	Aug 13, 2013
GSE53567	Enhancers implicate new genes in QT interval below GWAS detection threshold	Expression profiling by high throughput sequencing Other	Homo sapiens	3	TAR TXT XLS SRA Run Selector	Xinchen Wang	Oct 10, 2014
GSE59027	Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation	Other	Mus musculus	6	TAR SRA Run Selector	Josee Dostie	Dec 30, 2015
GSE59716	Condensin-Driven Remodeling of X-Chromosome Topology during Dosage Compensation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Caenorhabditis elegans	13	TAR	Barbara J. Meyer	Jun 03, 2015
GSE63717	Condensin-Driven Remodeling of X-Chromosome Topology during Dosage Compensation [Hi-C]	Other	Caenorhabditis elegans	2	TAR XLS SRA Run Selector	Barbara J. Meyer	Jun 03, 2015
GSE72697	Structural organization of the inactive X chromosome	Expression profiling by high throughput sequencing Other Third-party reanalysis	Mus musculus	8	TAR TXT SRA Run Selector	Bryan R Lajoie	Jul 18, 2016
GSE81026	Cis Regulatory Element Scan by Tiling-deletion and Sequencing	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens synthetic construct	23	BED BW PDF TAR SRA Run Selector	Bing Ren	Apr 17, 2017
GSE84792	Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding [Capture-C]	Other	Mus musculus	16	TAR SRA Run Selector	Guillaume Andrey	Dec 06, 2016
GSE84795	Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	114	BW TAR	Guillaume Andrey	Dec 06, 2016
GSE85944	Translation of poly(A) tails leads to precise mRNA cleavage and widespread ribosome rescue	Other	Saccharomyces cerevisiae	14	TAR SRA Run Selector	Nicholas R Guydosh	Jan 22, 2017
GSE92390	HiC of selected non-small cell lung carcinoma cell lines	Other	Homo sapiens	2	TAR SRA Run Selector	Job Dekker	Dec 15, 2016
GSE95131	Identification of splice variants and RNA binding partners of STAT3-induced long noncoding RNAs (STAiRs) in multiple myeloma	Expression profiling by high throughput sequencing Other	Homo sapiens	14	TAR SRA Run Selector	Stefanie Binder	Aug 01, 2017
GSE95567	In vivo probing of nascent RNA structures reveals principles of cotranscriptional folding	Expression profiling by high throughput sequencing Other	Escherichia coli	10	BEDGRAPH TAR SRA Run Selector	Danny Incarnato	Jul 19, 2017
GSE96033	Genome-wide Mapping of Lamin B1 Reveals the Existence of Dynamic and Functional Euchromatin Lamin B1 Domains (eLADs) at the onset of the Epithelial to Mesenchymal Transition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	27	BED BEDGRAPH TAR TXT SRA Run Selector	Enrique Blanco	Aug 30, 2018