GEO Browser - GEO

Series

Samples

Platforms

DataSets

96 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			MATRIX
GSE133228	STAG2 promotes CTCF-anchored loop extrusion and cis-promoter and -enhancer interactions	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	336	BED CEL MATRIX TAB	Olivier Delattre	Apr 29, 2021
GSE75070	RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	14	BED MATRIX TSV TXT SRA Run Selector	Rasim Barutcu	Aug 23, 2016
GSE84581	Dynamic Control of X-Chromosome Conformation and Repression by a Histone H4K20 Demethylase	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Caenorhabditis elegans	13	BW CSV MATRIX TXT SRA Run Selector	Barbara J. Meyer	Aug 31, 2017
GSE98015	Enhancer profiling in metastatic cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	72	BED BW MATRIX TXT	Sakari Vanharanta	Jun 12, 2018
GSE104427	A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus [RNA-Seq, HiC_C2C12, ChIP-Seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	27	BED BEDGRAPH MATRIX TXT SRA Run Selector	Rasim Barutcu	Feb 12, 2018
GSE106690	Dynamic reorganization of nuclear architecture during human cardiogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	36	BED BEDGRAPH BW MATRIX NARROWPEAK TXT	Charles Murry	Jan 04, 2018
GSE111205	The bipartite TAD organization of the X-inactivation centre ensures opposing developmental regulation of Tsix and Xist	Expression profiling by high throughput sequencing Other	Mus musculus	73	BED MATRIX TXT SRA Run Selector	Nicolas Servant	May 27, 2019
GSE112136	Mammalian ISWI and SWI/SNF selectively mediate binding of distinct groups of transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	90	BED MATRIX TSV WIG	Dirk Schuebeler	Apr 18, 2019
GSE114950	The effects of Arabidopsis genome duplication on the chromatin organization and transcriptional regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Arabidopsis thaliana	28	BROADPEAK MATRIX NARROWPEAK TXT SRA Run Selector	Hui Zhang	May 25, 2019
GSE117210	Architectural alterations in enhancer repertoires orchestrate senescence-associated secretory phenotype profile	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	33	BW MATRIX	Chao Zhang	Jul 18, 2018
GSE124409	Nuclear peripheral chromatin-lamin B1 interaction is required for global integrity of chromatin architecture and dynamics in human cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	20	BED BW MATRIX TAR TXT SRA Run Selector	Mengfan Li	Nov 08, 2020
GSE125243	A Novel Glioma-specific Enhancer Maintains Glioma Temozolomide Sensitivity By Regulation of RasGRP3 Expression via Long-range Chromosome Interactions	Expression profiling by high throughput sequencing Other	Homo sapiens	12	MATRIX TXT WIG SRA Run Selector	Bohan Chen	Jan 18, 2019
GSE126460	Gene expression and chromatin organization changes in lamin A/C haploinsufficient human induced pluripotent stem cell-derived cardiomyocytes	Expression profiling by high throughput sequencing Other	Homo sapiens	15	BEDGRAPH MATRIX TXT	Alessandro Bertero	Feb 13, 2019
GSE128568	X chromosome domain architecture regulates Caenorhabditis elegans lifespan but not dosage compensation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Caenorhabditis elegans	26	BW MATRIX TXT	Elphege P Nora	Sep 05, 2019
GSE130140	Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	92	BED BW COV MATRIX NARROWPEAK SF TAR TXT SRA Run Selector	Zhenjia Wang	Aug 19, 2020
GSE152900	KLF4 Recruits SWI/SNF to Increase Chromatin Accessibility and Reprogram the Endothelial Enhancer Landscape under Laminar Shear Stress	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	73	BEDPE MATRIX	Jan-Renier Moonen	May 28, 2021
GSE161366	Histone H2B.8 compacts flowering plant sperm through chromatin phase separation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Arabidopsis thaliana	48	BED BW MATRIX TXT SRA Run Selector	Xiaoqi Feng	Jul 26, 2022
GSE162461	Single-cell intracellular epitope and transcript detection revealing signal transduction dynamics	Expression profiling by high throughput sequencing Other	Homo sapiens	16	MATRIX TSV TXT XLSX SRA Run Selector	Francesca Rivello	Mar 03, 2022
GSE179435	The effect of trisomic chromosomes on spatial genome organization and global transcription in embryonic stem cells	Expression profiling by high throughput sequencing Other	Mus musculus	29	MATRIX TXT SRA Run Selector	Mengfan Li	Dec 31, 2022
GSE186206	Dynamic genome-wide interaction patterns elucidate the roles of Ki67 in chromatin organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	213	BED BW MATRIX TSV SRA Run Selector	Bas van Steensel	Oct 20, 2021