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21 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			HDF5
GSE77565	Genome-wide chromosomal conformation elucidates regulatory relationships in human brain development and disease	Other	Homo sapiens	6	BED HDF5 SRA Run Selector	Hyejung Won	Oct 20, 2016
GSE80280	3D structures of individual mammalian genomes reveal principles of nuclear organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED HDF5 PDB TSV TXT XYZ SRA Run Selector	Andre J Faure	Mar 07, 2017
GSE92715	Regulation of yeast chromosome III architecture and mating-type switching by a Sir2/condensin-bound region of the recombination enhancer [HiC-Seq]	Other	Saccharomyces cerevisiae	10	HDF5 SRA Run Selector	Ryan D Fine	May 23, 2019
GSE92717	Regulation of yeast chromosome III architecture and mating-type switching by a Sir2/condensin-bound region of the recombination enhancer	Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	20	HDF5	Ryan D Fine	May 23, 2019
GSE117037	Depletion of limiting rDNA structural complexes triggers chromosomal instability and replicative aging of Saccharomyces cerevisiae	Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	4	HDF5 SRA Run Selector	Ryan D Fine	Mar 12, 2019
GSE119644	Transcriptome-stable isotope probing provides targeted functional and taxonomic insights into hypoxic pollutant-degrading aquifer microbiota	Expression profiling by high throughput sequencing Other	aquifer metagenome	8	HDF5 TXT SRA Run Selector	Tillmann Lueders	Sep 07, 2018
GSE123636	An RNA binding region in CTCF regulates chromatin looping and CTCF nuclear organization	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	18	BW HDF5 HIC TXT SRA Run Selector	Robert Tjian	May 30, 2019
GSE126900	Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection [16s rRNA gene V4 region]	Other	human metagenome	34	HDF5 SRA Run Selector	Elodie Ghedin	Mar 19, 2020
GSE134590	Compartment-dependent chromatin interaction dynamics revealed by liquid chromatin Hi-C	Other	Homo sapiens	34	BEDGRAPH HDF5 TXT SRA Run Selector	Houda Belaghzal	Dec 11, 2020
GSE158374	Genes with 5′ terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 NSP1 protein	Expression profiling by high throughput sequencing Other	Homo sapiens	30	HDF5 SRA Run Selector	Hakan Ozadam	Oct 01, 2020
GSE167579	Comparative 3D Genome Architecture in Vertebrates (Hi-C)	Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus	25	BED HDF5 XLS SRA Run Selector	Mengnan He	Apr 12, 2022
GSE167581	Comparative 3D Genome Architecture in Vertebrates	Expression profiling by high throughput sequencing Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	54	BED HDF5 XLS	Mengnan He	Apr 12, 2022
GSE168182	Dynamics of synthetic yeast chromosome evolution shaped by hierarchical chromatin structures	Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	4	BW FA HDF5 SRA Run Selector	Zhou Sijie	Jun 10, 2022
GSE173354	Interplay between CTCF boundaries and a super enhancer controls cohesin extrusion trajectories and gene expression	Other	Mus musculus	27	HDF5 HIC WIG SRA Run Selector	Peter Krijger	Jun 30, 2021
GSE185732	Single cell quantification of ribosome occupancy in early mouse development	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	58	CSV HDF5 XLSX SRA Run Selector	Can Cenik	Feb 06, 2023
GSE230827	Multiomic Single Cell Sequencing Identifies Stemlike Nature of Mixed Phenotype Acute Leukemia and Provides Novel Risk Stratification [DAb-seq]	Other	Homo sapiens	6	H5AD HDF5	Catherine Smith	Aug 07, 2023
GSE231767	heart healthy and heart diseased SCGs	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	25	GTF HDF5 MTX TAR TSV XLSX	Karin A. Ziegler	Jul 20, 2023
GSE232074	Multiomic Single Cell Sequencing Identifies Stemlike Nature of Mixed Phenotype Acute Leukemia and Provides Novel Risk Stratification	Other Expression profiling by high throughput sequencing	Homo sapiens	31	H5AD HDF5 MTX TSV	Catherine Smith	Aug 07, 2023
GSE233223	spatial RNA-seq of SCG	Other	Mus musculus	1	HDF5 TAR	Karin A. Ziegler	Jul 20, 2023
GSE255224	Single Nucleotide Polymorphism (SNP) and Antibody-based Cell Sorting (SNACS): A tool for demultiplexing single-cell DNA sequencing data	Other	Homo sapiens	15	CSV HDF5	Catherine Smith	Feb 09, 2024