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84 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			GFF
GSE217148	Genomic and Transcriptional Characterisation of Carbapenem and Colistin Resistance Mechanisms in Klebsiella pneumoniae	Expression profiling by high throughput sequencing Other	Acinetobacter baumannii Enterobacter asburiae Enterobacter bugandensis Enterobacter cloacae Enterobacter cloacae complex sp. R_G8 Klebsiella pneumoniae	22	CSV DIFF GFF PDF	John Osei Sekyere	Nov 07, 2022
GSE248611	Characterization of the enzyme for 5-hydroxymethyluridine production and its role in silencing transposable elements in dinoflagellates	Expression profiling by high throughput sequencing Other	Amphidinium carterae	27	CGMAP FA GFF TXT WIG	Hao Chen	Sep 29, 2024
GSE39045	Deposition of histone variant H2A.Z within gene bodies regulates responsive genes	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Arabidopsis thaliana	38	GFF SRA Run Selector	Toshiro Nishimura	Dec 13, 2012
GSE76651	Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana	5	GFF	Jean Molinier	Aug 17, 2016
GSE86395	A genome-wide study reveals a pathway for small RNA-mediated recognition of UV-induced DNA lesions (CPDs)	Other	Arabidopsis thaliana	7	GFF SRA Run Selector	Jean Molinier	Mar 01, 2017
GSE86403	A genome-wide study reveals a pathway for small RNA-mediated recognition of UV-induced DNA lesions	Other Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	23	GFF	Jean Molinier	Mar 01, 2017
GSE122394	DNA methylation and histone H1 jointly repress transposable elements and aberrant intragenic transcripts	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	132	BW GFF SRA Run Selector	Jaemyung Choi	Nov 20, 2019
GSE176526	Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	14	BED GFF TXT SRA Run Selector	Xiaoqi Feng	Feb 15, 2024
GSE18215	High throughput sequencing of mutants in the WAGO pathway	Non-coding RNA profiling by high throughput sequencing Other	Caenorhabditis elegans	18	GFF TAR SRA Run Selector	Craig Mello	Oct 01, 2009
GSE18231	WAGO pathway	Non-coding RNA profiling by genome tiling array Non-coding RNA profiling by high throughput sequencing Other	Caenorhabditis elegans	20	BAR CEL GFF TAR	Craig Mello	Oct 01, 2009
GSE55325	Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates (CEL PAR-CLIP)	Other Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	3	GFF SRA Run Selector	Marvin Jens	Nov 20, 2014
GSE55332	Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates (CEL small RNA)	Other Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	2	GFF WIG SRA Run Selector	Marvin Jens	Nov 20, 2014
GSE55333	Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens	34	GFF TSV TXT WIG	Marvin Jens	Nov 20, 2014
GSE227552	NanoDam Profiling of EGL-43 and FOS-1 in Dopaminergic Neurons	Other	Caenorhabditis elegans	9	BED BEDGRAPH GFF	Callista Yee	May 29, 2024
GSE232946	NanoDam Profiling of EGL-43 in the Anchor Cell	Other	Caenorhabditis elegans	6	BED BEDGRAPH GFF	Callista Yee	Jun 30, 2023
GSE208756	Complementary Ribo-seq approaches refine the translatome and provide a small protein census in a bacterial pathogen	Other Expression profiling by high throughput sequencing	Campylobacter jejuni	30	BW GFF	Rick Gelhausen	May 23, 2024
GSE176207	A small RNA regulates pprM, a modulator of pleiotropic proteins promoting DNA repair, in Deinococcus radiodurans under ionizing radiation	Expression profiling by high throughput sequencing Other	Deinococcus radiodurans	18	GFF SRA Run Selector	Lydia Contreras	Jun 18, 2021
GSE17285	Kc167 Replication Origins	Other	Drosophila melanogaster	4	GFF TXT WIG	DCC modENCODE	Jul 29, 2009
GSE17286	S2-DRSC Replication Origins	Other	Drosophila melanogaster	3	GFF TXT WIG	DCC modENCODE	Jul 29, 2009
GSE17287	ML-DmBG3-c2 Replication Origins	Other	Drosophila melanogaster	3	GFF TXT WIG	DCC modENCODE	Jul 29, 2009