GEO Browser - GEO

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55 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			FPKM_TRACKING
GSE110342	Impact of G-content on Arabidopsis AtPAB binding and their role in enhancing translational efficiency	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana	31	BED BW FPKM_TRACKING SRA Run Selector	xiaofeng cao	Aug 14, 2019
GSE119706	RNA degradomes reveal substrates and importance for dark and nitrogen stress responses of Arabidopsis XRN4	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	22	FPKM_TRACKING TXT SRA Run Selector	Pamela J Green	Aug 13, 2019
GSE166897	The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Arabidopsis thaliana blank sample	241	BW FPKM_TRACKING TXT WIG	magdalena ewelina potok	Nov 23, 2021
GSE53144	Male and Female DNA and RNA sequencing in several nematode species	Expression profiling by high throughput sequencing Other	Caenorhabditis brenneri Caenorhabditis briggsae Caenorhabditis elegans Caenorhabditis remanei Pristionchus pacificus	31	BEDGRAPH FPKM_TRACKING SRA Run Selector	Sarah Elizabeth Albritton	Apr 17, 2014
GSE101964	Adult-specific trimethylation of histone H3 lysine 4 is prone to dynamic changes with aging in C. elegans somatic cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Caenorhabditis elegans	28	BW FPKM_TRACKING SRA Run Selector	Siu Sylvia Lee	Dec 20, 2017
GSE61910	Reduced expression of RBM47 enhances Nrf2 activity to promote tumor growth in A549 lung adenocarcinoma cells	Expression profiling by high throughput sequencing Other	Homo sapiens	8	FPKM_TRACKING SRA Run Selector	Daizo Koinuma	Mar 01, 2016
GSE62193	Dissecting neural differentiation regulatory networks through epigenetic footprinting	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	99	FPKM_TRACKING TXT SRA Run Selector	Michael Johannes Ziller	Nov 02, 2014
GSE62907	The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	39	BEDGRAPH CEL FPKM_TRACKING TXT	Ronan Chaligné	Jan 19, 2015
GSE62966	Analysis of allele specific expression and its chromatin state to identify genes that are escaping X chromosome inactivation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	29	BEDGRAPH FPKM_TRACKING TXT XLS SRA Run Selector	Ronan Chaligné	Jan 22, 2015
GSE76922	Comprehensive molecular phenotypic effects of the large deletion on chromosome 22q11.2	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	59	BROADPEAK FPKM_TRACKING NARROWPEAK TXT SRA Run Selector	Xianglong Zhang	Sep 05, 2017
GSE83728	Epigenetic Lanscape and BRD4 Transcriptional Dependency of PAX3-FOXO1 Driven Rhabdomyosarcoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	80	BED BEDGRAPH FPKM_TRACKING	Xinyu Wen	Apr 27, 2017
GSE86189	A compendium of promoter-centered long-range chromatin interactions in diverse human tissues and cell types	Other	Homo sapiens	249	BEDPE FPKM_TRACKING TXT SRA Run Selector	Inkyung Jung	Jul 31, 2019
GSE93676	Viral and Cellular N6-methyladenosine (m6A) Epitranscriptomes in KSHV Life Cycle	Expression profiling by high throughput sequencing Other	Homo sapiens Rattus norvegicus	72	BEDGRAPH FPKM_TRACKING SRA Run Selector	Hui Liu	Oct 31, 2017
GSE95744	ICF-specific DNMT3B dysfunction interferes with intragenic regulation of mRNA transcription and alternative splicing (RIP-seq)	Other	Homo sapiens	8	FPKM_TRACKING SRA Run Selector	Miriam Gagliardi	Mar 07, 2017
GSE95747	ICF-specific DNMT3B dysfunction interferes with intragenic regulation of mRNA transcription and alternative splicing	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	40	BED FPKM_TRACKING TXT	Miriam Gagliardi	Mar 07, 2017
GSE109924	TAD cliques shape the 4-dimensional genome during dual lineage terminal differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	34	BED BW FPKM_TRACKING HIC SRA Run Selector	Philippe Collas	Feb 23, 2019
GSE112276	Transcriptome Mapping of Internal N7-methylguanosine Methylome in Mammalian mRNA	Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	104	BED FPKM_TRACKING TXT XLSX SRA Run Selector	Li-Sheng Zhang	Apr 26, 2019
GSE122690	Genome-wide co-localization of RNA-DNA interactions and fusion RNA pairs	Expression profiling by high throughput sequencing Other	Homo sapiens	72	BEDPE FPKM_TRACKING TXT	Sheng Zhong	Jan 09, 2019
GSE124769	Oncogenic extrachromosomal DNA functions as mobile enhancers to globally amplify chromosomal transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	49	BW DIFF FPKM_TRACKING NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Apr 08, 2021
GSE135176	Genome-wide analysis of histone modification alteration in EBV(+) GC cell lines	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	75	BIGWIG FPKM_TRACKING HIC	Masaki Fukuyo	May 23, 2020