GEO Browser - GEO

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411 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			BEDPE
GSE166177	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis [HiChIP]	Other	Mus musculus	6	BEDPE HIC TXT SRA Run Selector	Eneritz Agirre	Jan 28, 2022
GSE183556	MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	550	BEDPE TXT	Asifa Akhtar	Aug 10, 2023
GSE183764	9sCa: MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	244	BED BEDPE BW RDATA RDS TSV TXT SRA Run Selector	Asifa Akhtar	Aug 10, 2023
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE134543	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination [Hi-C]	Other	Mus musculus	2	BEDPE HIC SRA Run Selector	Frederick W Alt	Aug 19, 2019
GSE60623	Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C	Other	Homo sapiens	4	BEDPE BEDQE BEDTE SRA Run Selector	Ferhat Ay	Apr 29, 2015
GSE202471	High-resolution genome topology of human retina uncovers super enhancer-promoter interactions at tissue-specific and multifactorial disease loci [Hi-C]	Other	Homo sapiens	5	BED BEDGRAPH BEDPE HIC	Zachary A Batz	Sep 09, 2022
GSE229681	Stage-specific dynamic reorganization of genome topology shapes transcriptional neighborhoods in developing human retinal organoids	Other	Homo sapiens	5	BED BEDGRAPH BEDPE CSV HIC MCOOL TSV TXT	Zachary A Batz	Nov 03, 2023
GSE229683	Stage-specific dynamic reorganization of genome topology shapes transcriptional neighborhoods in developing human retinal organoids	Expression profiling by high throughput sequencing Other	Homo sapiens	20	BED BEDGRAPH BEDPE HIC MCOOL TXT	Zachary A Batz	Nov 03, 2023
GSE249578	EWS::FLI cooperatively binds at GGAA microsatellites via DBD-a4 helix	Other Expression profiling by high throughput sequencing	Homo sapiens	45	BED BEDPE BW HIC NARROWPEAK TSV TXT	Ariunaa Bayanjargal	Feb 01, 2024
GSE214918	Three-way contact analysis characterizes the higher-order organization of the Tcra locus	Other	Mus musculus	33	BEDGRAPH BEDPE MATRIX	Hao bingtao	Nov 28, 2022
GSE265888	Dynamic Chromatin Boundaries of TCR Loci Coincide V(D)J recombination During T Cell Development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	79	BED BEDGRAPH BEDPE BROADPEAK BW CSV HIC MATRIX TXT	Hao bingtao	Apr 27, 2024
GSE197024	Epigenetic modules governing skin epidermal homeostasis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	46	BED BEDPE HIC TXT	Stephen R Brooks	Jan 13, 2023
GSE185532	HiChIP data for HNSCC subtypes	Other	Homo sapiens	4	BED BEDPE TXT	Scot Carson Callahan	Jul 20, 2022
GSE179010	cLoops2: a full-stack comprehensive analytical tool for chromatin interactions	Other	Homo sapiens	8	BED BEDPE SRA Run Selector	Yaqiang Cao	Nov 29, 2021
GSE180175	Hi-TrAC reveals fine-scale chromatin structures organized by transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	136	BEDPE BW TXT SRA Run Selector	Yaqiang Cao	Oct 02, 2022
GSE204946	Restraint of IFN-γ expression through a distal silencer CNS–28 for tissue homeostasis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	92	BEDPE BW TXT	Yaqiang Cao	Mar 01, 2023
GSE214438	Age-associated chromatin re-organization in progenitor B cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	76	BED BEDPE TXT	Yaqiang Cao	Mar 01, 2024
GSE237916	Regulation of T helper cell differentiation by the interplay between histone modification and chromatin interaction	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	197	BEDPE BW DIFF TXT	Yaqiang Cao	Mar 01, 2024
GSE153574	A cohesin cancer mutation reveals a role for the hinge domain in genome organization and gene expression [Hi-C]	Other	Mus musculus	4	BEDPE HIC SRA Run Selector	Zachary Carico	Feb 23, 2021