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16959 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
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GSE97756	Microbial community analyses of two 1,4-dioxane degrading consortia enriched from uncontaminated soils [16s rRNA]	Other	1,4-dioxane-degrading enrichment culture	4	XLSX SRA Run Selector	Ya He	May 01, 2018
GSE97757	SDIMO gene analysis of two 1,4-dioxane degrading consortia enriched from uncontaminated soils	Other	1,4-dioxane-degrading enrichment culture	4	XLSX SRA Run Selector	Ya He	May 01, 2018
GSE97758	Microbial community and SDIMO analyses of two 1,4-dioxane degrading consortia	Other	1,4-dioxane-degrading enrichment culture	8	XLSX	Ya He	May 01, 2018
GSE157085	Diverse CGG binding proteins across eukaryotes produced by independent domestications of hAT transposons	Other	Acanthochromis polyacanthus Acipenser ruthenus Acyrthosiphon pisum Aedes aegypti Amphiprion ocellaris Amphiprion percula Anabarilius grahami Anabas testudineus Austrofundulus limnaeus Chrysemys picta Crocodylus porosus Culex quinquefasciatus Cyprinus carpio Erpetoichthys calabaricus Fundulus heteroclitus Gallus gallus Hippocampus comes Hofstenia miamia Homo sapiens Hucho hucho Kryptolebias marmoratus Labeo rohita Latimeria chalumnae Locusta migratoria Mola mola Nematostella vectensis Paramormyrops kingsleyae Petromyzon marinus Rhipicephalus appendiculatus Rhizophagus irregularis Rhodnius prolixus Salarias fasciatus Salmo salar Sparus aurata Sphaeramia orbicularis synthetic construct	258	TXT	Isaac Yellan	Feb 09, 2021
GSE107550	The FibroChip, a functional DNA microarray to monitor cellulolysis and hemicellulolysis activities of rumen microbiota	Expression profiling by array Other	Acetivibrio clariflavus Acetivibrio thermocellus Agathobacter rectalis Bacteroides fragilis Bacteroides ovatus Bacteroides sp. Bacteroides thetaiotaomicron Bacteroides xylanisolvens Bacteroides xylanisolvens XB1A Bifidobacterium adolescentis Bifidobacterium animalis Bifidobacterium longum Butyrivibrio fibrisolvens Butyrivibrio hungatei Cellulomonas fimi Cellulomonas flavigena Cellulosilyticum ruminicola Clostridioides difficile Clostridium acetobutylicum Clostridium beijerinckii Clostridium cellulovorans Enterobacter sp. Enterococcus faecium Epidinium caudatum Epidinium ecaudatum Escherichia coli K-12 Eudiplodinium maggii Fibrobacter intestinalis Fibrobacter succinogenes Fibrobacter succinogenes subsp. succinogenes S85 Lachnospira eligens Lactococcus lactis Levilactobacillus brevis Limosilactobacillus fermentum Neocallimastix frontalis Neocallimastix patriciarum Orpinomyces joyonii Orpinomyces sp. Piromyces communis Piromyces rhizinflatus Piromyces sp. Piromyces sp. 'equi' Polyplastron multivesiculatum Pseudobacteroides cellulosolvens Pseudobutyrivibrio xylanivorans Roseburia hominis Roseburia intestinalis Ruminiclostridium cellulolyticum Ruminococcus albus Ruminococcus champanellensis Ruminococcus flavefaciens Ruminococcus sp. Segatella bryantii Selenomonas ruminantium Xylanibacter ruminicola [Eubacterium] cellulosolvens bovine gut metagenome uncultured Neocallimastigales	14	TXT	Sophie Comtet-Marre	Dec 01, 2017
GSE18711	A phylogenetic microarray targeting 16S rRNA genes from the bacterial division Acidobacteria	Other	Acidobacteriota uncultured Acidobacteriota bacterium	10	XLS	Mark R Liles	Jan 01, 2010
GSE17221	Rapid Identification of Bacterial Pathogens using a PCR- and Microarray-Based Assay	Other	Acinetobacter baumannii Enterococcus faecalis Enterococcus faecium Haemophilus influenzae Homo sapiens Klebsiella pneumoniae Listeria monocytogenes Neisseria meningitidis Staphylococcus aureus Staphylococcus epidermidis Streptococcus agalactiae Streptococcus pneumoniae Streptococcus pyogenes unidentified	195	TXT	Anna-Kaarina Jarvinen	Aug 31, 2009
GSE85110	TSS-EMOTE, a refined protocol for a more complete and less biased global mapping of transcription start sites in bacterial pathogens.	Expression profiling by high throughput sequencing Other	Acinetobacter baumannii Klebsiella aerogenes Staphylococcus aureus Staphylococcus epidermidis	30	TSV SRA Run Selector	Julien Prados	Oct 15, 2016
GSE96745	Tn-Seq of Benzalkonium Chloride Treated and Untreated Acinetobacter baumannii	Other	Acinetobacter baumannii	4	TXT SRA Run Selector	Bryan Davies	Jan 23, 2018
GSE96913	Tn-Seq and RNA-seq of Benzalkonium Chloride Treated and Untreated Acinetobacter baumannii	Other Expression profiling by high throughput sequencing	Acinetobacter baumannii	8		Bryan Davies	Jan 23, 2018
GSE125085	Method for absolute quantification of microbial communities by using both microarrays and competitive PCR	Other	Acinetobacter baumannii Aggregatibacter actinomycetemcomitans Bacillus cereus Bacteria Bifidobacterium adolescentis Campylobacter rectus Capnocytophaga gingivalis Cereibacter sphaeroides Clostridium beijerinckii Cutibacterium acnes Deinococcus radiodurans Enterococcus faecalis Escherichia coli Fusobacterium nucleatum Fusobacterium nucleatum subsp. nucleatum Helicobacter pylori Homo sapiens Lactobacillus gasseri Neisseria meningitidis Phocaeicola vulgatus Porphyromonas gingivalis Prevotella intermedia Prevotella nigrescens Pseudomonas aeruginosa Schaalia odontolytica Staphylococcus aureus Staphylococcus epidermidis Streptococcus agalactiae Streptococcus gordonii Streptococcus intermedius Streptococcus mutans Tannerella forsythia Treponema denticola	178	CSV	Naoyuki Togawa	Jan 16, 2019
GSE198004	Tn-seq of desiccated Acinetobacter baumannii	Other	Acinetobacter baumannii	8	XLSX	Erin R Green	Mar 09, 2022
GSE217148	Genomic and Transcriptional Characterisation of Carbapenem and Colistin Resistance Mechanisms in Klebsiella pneumoniae	Expression profiling by high throughput sequencing Other	Acinetobacter baumannii Enterobacter asburiae Enterobacter bugandensis Enterobacter cloacae Enterobacter cloacae complex sp. R_G8 Klebsiella pneumoniae	22	CSV DIFF GFF PDF	John Osei Sekyere	Nov 07, 2022
GSE256507	Emx2 underlies the development and evolution of marsupial gliding membranes	Other	Acrobates pygmaeus Dactylopsila trivirgata Distoechurus pennatus Macropus fuliginosus Macropus giganteus Petauroides volans Petaurus breviceps Phalanger gymnotis Pseudocheirus occidentalis Pseudocheirus peregrinus Pseudochirops archeri Pseudochirops corinnae Pseudochirops cupreus Tarsipes rostratus Vombatus ursinus	15	FASTA	Olga Dudchenko	May 22, 2024
GSE51576	Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior	Other Expression profiling by high throughput sequencing	Acromyrmex echinatior	18	TXT SRA Run Selector	Hong zhi Cao	Oct 02, 2014
GSE169088	3D genomics across the tree of life reveals condensin II as a determinant of architecture type	Other	Acropora millepora Aedes aegypti Agaricus bisporus Aplysia californica Arachis hypogaea Branchiostoma lanceolatum Caenorhabditis elegans Chiloscyllium punctatum Ciona intestinalis Clonorchis sinensis Cristatella mucedo Culex quinquefasciatus Drosophila melanogaster Gallus gallus Homo sapiens Hypsibius dujardini Lethenteron camtschaticum Muntiacus muntjak Muntiacus reevesi Notamacropus eugenii Pleurobrachia bachei Pygocentrus nattereri Python bivittatus Saccharomyces cerevisiae Strongylocentrotus purpuratus Triticum aestivum Xenopus laevis	32	BEDPE FASTA HIC VCF WIG SRA Run Selector	Olga Dudchenko	Apr 23, 2021
GSE124256	Surviving climate change – the role of acclimatization in reef-building corals [16S]	Other	Acropora palmata	36	CSV SRA Run Selector	Iliana B Baums	Dec 18, 2020
GSE124257	Surviving climate change – the role of acclimatization in reef-building corals	Methylation profiling by high throughput sequencing Other	Acropora palmata	72		Iliana B Baums	Dec 05, 2019
GSE107526	Identification of the genes regulated by the two-component system response regulator NarP of Actinobacillus pleuropneumoniae by DNA-affinity-purified (DAP) sequencing	Other	Actinobacillus pleuropneumoniae	2	BED SRA Run Selector	Lu Li	Nov 30, 2019
GSE224057	Actinobacillus pleuropneumoniae encodes multiple phase-variable DNA methyltransferases that control distinct phasevarions	Other	Actinobacillus pleuropneumoniae Escherichia coli	16	RDS	Matthew Ritchie	Feb 02, 2023