GEO Browser - GEO

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273 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other			SRA Run Selector
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE114981	Activation of HOTTIP lncRNA perturbs HSC function leading to AML like disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	66	BED TXT SRA Run Selector	Suming Huang	Dec 03, 2019
GSE115096	HOXBLINC is aberrantly expressed in acute myeloid leukemia and functions as a potent oncogenic long non-coding RNA in leukemogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	40	BED TXT SRA Run Selector	Suming Huang	Jan 27, 2021
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	BIGWIG BROADPEAK FPKM_TRACKING HIC NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE123653	CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming [BL-Hi-C]	Other	Mus musculus	40	HIC SRA Run Selector	ya wei song	Apr 05, 2022
GSE124463	Promoter capture Hi-C identifies long-range promoter contact dynamics in response to diet and the development of non-alcoholic fatty liver disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	46	BED BIGWIG TXT SRA Run Selector	Paul A Wade	Jan 01, 2020
GSE124596	A conserved noncoding locus modulates random monoallelic Xist expression across a TAD boundary	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	56	BED BEDGRAPH BW CSV TXT SRA Run Selector	Nicolas Servant	Dec 01, 2019
GSE125068	Immediate and deferred epigenomic signatures of in vivo neuronal activation in mouse hippocampus	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	40	SRA Run Selector	Angel Barco	Sep 03, 2019
GSE125595	RNA interactions are essential for proper CTCF function	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	24	BW CLOUPE HIC TXT SRA Run Selector	Ricardo Saldana-Meyer	Sep 12, 2019
GSE125656	Exonuclease combinations reduce noises in 3D genomics technologies	Other Third-party reanalysis	Mus musculus	27	HIC TXT SRA Run Selector	Qing Li	Apr 08, 2020
GSE125972	A distal super enhancer mediates estrogen-dependent mouse uterine–specific gene transcription of Insulin-like growth factor 1 (Igf1)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	38	BIGWIG HIC TXT SRA Run Selector	Sylvia C Hewitt	May 08, 2019
GSE126362	Pax3 cooperates with Ldb1 to direct local chromosome architecture during lineage specification	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	60	BED HIC SRA Run Selector	Alessandro Magli	Apr 16, 2019
GSE128298	Translatome and transcriptome analysis of resting B and T cells from mice	Expression profiling by high throughput sequencing Other	Mus musculus	8	TAB SRA Run Selector	G Aneeshkumar Arimbasseri	Aug 07, 2019
GSE129037	Uncoupling histone H3K4 trimethylation from developmental gene expression via an epigenetic equilibrium of Polycomb, COMPASS and DNA methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	128	BW COV TXT SRA Run Selector	Ali Shilatifard	Mar 17, 2020
GSE130723	H4K20me3 methyltransferase SUV420H2 shapes the chromatin landscape of pluripotent embryonic stem cells	Other	Mus musculus	6	HIC SRA Run Selector	Benjamin L Kidder	Nov 13, 2020
GSE131580	Combined Cohesin-Runx1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes [Hi-C]	Other	Homo sapiens Mus musculus	16	BEDPE SRA Run Selector	Yotaro Ochi	Apr 07, 2020
GSE131782	Spen regulates X chromosome inactivation (CUT&RUN)	Other	Mus musculus	10	BW SRA Run Selector	samuel Collombet	Dec 08, 2019
GSE133760	Hierarchical enhancers 1 confer the temporal and partially compensatory transcriptional regulation of Nkx2-5 during heart development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	37	BW COOL TXT SRA Run Selector	Yaxi Liu	Jul 03, 2022
GSE133905	CNS-Native Myeloid Cells Drive Immune Suppression in the Brain Metastatic Niche through Cxcl10	Other Expression profiling by high throughput sequencing	Mus musculus	3	CSV SRA Run Selector	Siyuan Zhang	Oct 29, 2020
GSE134284	CNS-Native Myeloid Cells Drive Immune Suppression in the Brain Metastatic Niche through Cxcl10	Other	Mus musculus	3	CSV SRA Run Selector	Siyuan Zhang	Oct 29, 2020