GEO Browser - GEO

Series

Samples

Platforms

DataSets

53 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other			NARROWPEAK
GSE214264	3D genome structures of single differentiating mouse ES cells reveal a unique reorganisation of chromatin in the formative state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	101	BROADPEAK BW CSV NARROWPEAK NCC TSV TXT	David Lando	Jan 19, 2024
GSE206875	A non-coding single nucleotide polymorphism at 8q24 drives IDH1-mutant glioma formation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	24	NARROWPEAK ZIP	Daniel Schramek	Sep 12, 2022
GSE166074	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis [Cut&Run IFNgvsCtr]	Other	Mus musculus	21	BROADPEAK NARROWPEAK WIG SRA Run Selector	Eneritz Agirre	Jan 28, 2022
GSE201655	An activity-specificity trade-off encoded in human transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	100	CSV MTX NARROWPEAK TAB TSV	Alexandre P Magalhaes	Feb 27, 2024
GSE229137	Autophagy engaging and non-engaging hematopoietic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	607	BW NARROWPEAK	Paul Vincent Dellorusso	May 15, 2024
GSE260881	B cell differentiation into germinal center and antibody-secreting cells depends on SMARCA5-mediated chromatin remodeling[CUT & RUN]	Other	Mus musculus	4	NARROWPEAK	Ziv Shulman	Sep 01, 2024
GSE212252	Balanced SET levels favor the correct enhancer repertoire during cell fate acquisition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio Homo sapiens Mus musculus	80	BROADPEAK HIC NARROWPEAK TAB	Luca Massimino	Sep 12, 2022
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus synthetic construct	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022
GSE272483	CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Third-party reanalysis	Mus musculus	54	BW NARROWPEAK TAR	Lucille Lopez-Delisle	Jul 18, 2024
GSE263464	CUT&Tag assay for ATF4 in C57BL/6 primarily cultured neurons.	Other	Mus musculus	2	BW NARROWPEAK	Yikui Liu	Sep 13, 2024
GSE221345	Cdc73 protects Notch-induced T-cell leukemia cells from DNA damage and mitochondrial stress	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	76	BED BIGWIG NARROWPEAK TXT	Brian Magnuson	Aug 29, 2023
GSE219097	Cdc73 protects Notch-induced T-cell leukemia cells from DNA damage and mitochondrial stress [Bru-seq and BruUV-seq]	Other	Mus musculus	36	BED BIGWIG CSV NARROWPEAK XLSX	Brian Magnuson	Aug 30, 2023
GSE184471	Cell-type differential targeting of Setdb1 prevents aberrant CTCF binding, chromatin looping, and cis-regulatory interactions	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	44	BW HIC NARROWPEAK SRA Run Selector	Lut Fei Tam	Nov 01, 2023
GSE183806	Chromatin architecture of B cell development during the humoral immune response	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	107	BIGWIG BW MCOOL NARROWPEAK SF	Ashley Stephen Doane	Sep 09, 2021
GSE175618	DYSREGULATION OF THE m6A EPITRANSCRIPTOME AS A NEW MECHANISM INVOLVED IN HIPPOCAMPAL-DEPENDENT MEMORY DEFECTS IN HD MICE	Other	Mus musculus	48	BED NARROWPEAK SRA Run Selector	Ulf Vang Ørom	Jul 20, 2022
GSE191146	Deeply hidden genome organization mediated by base-unpairing regions (BURs) directly bound by SATB1 linked to transcription	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	38	BW HIC NARROWPEAK	Terumi Kohwi-Shigematsu	Dec 28, 2021
GSE140363	Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	122	BED BEDGRAPH BROADPEAK BW CSV HIC NARROWPEAK SRA Run Selector	Nishana Mayilaadumveettil	Apr 14, 2020
GSE237643	Deletion of the mRNA endonuclease Regnase-1 promotes NK cell anti-tumor activity via OCT2- dependent transcription of Ifng	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	58	BW H5 NARROWPEAK	Xin Sun	May 30, 2024
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	BED BEDGRAPH BW MTX NARROWPEAK TAB TSV TXT XLSX SRA Run Selector	Boyan Bonev	Apr 30, 2024