GEO Browser - GEO

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57 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other			NARROWPEAK
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	BIGWIG BROADPEAK FPKM_TRACKING HIC NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE140363	Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	122	BED BEDGRAPH BROADPEAK BW CSV HIC NARROWPEAK SRA Run Selector	Nishana Mayilaadumveettil	Apr 14, 2020
GSE151704	FTO mediates LINE1 m6A demethylation and chromatin regulation in mESCs and mouse tissues	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	104	CSV NARROWPEAK TXT SRA Run Selector	Chuan He	May 05, 2022
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus synthetic construct	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022
GSE166074	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis [Cut&Run IFNgvsCtr]	Other	Mus musculus	21	BROADPEAK NARROWPEAK WIG SRA Run Selector	Eneritz Agirre	Jan 28, 2022
GSE166426	Histone H1 regulates non-coding RNA turnover on chromatin in a m6A-dependent manner	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	32	BED BW NARROWPEAK SRA Run Selector	Maria Gomez	Sep 13, 2022
GSE174643	Proteome-wide profiling of Transcriptional Machinery on Accessible Chromatin by biotinylated transposon	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	42	NARROWPEAK	Haizhu Zhang	Jan 16, 2024
GSE175618	DYSREGULATION OF THE m6A EPITRANSCRIPTOME AS A NEW MECHANISM INVOLVED IN HIPPOCAMPAL-DEPENDENT MEMORY DEFECTS IN HD MICE	Other	Mus musculus	48	BED NARROWPEAK SRA Run Selector	Ulf Vang Ørom	Jul 20, 2022
GSE183399	METTL14 is a chromatin regulator independent of RNA N6-methyladenosine (m6A MeRIP-Seq)	Other	Mus musculus	32	NARROWPEAK SRA Run Selector	Xiaoyang Dou	Aug 16, 2024
GSE183403	METTL14 is a chromatin regulator independent of RNA N6-methyladenosine	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	98	BED BIGWIG NARROWPEAK TXT	Xiaoyang Dou	Aug 16, 2024
GSE183806	Chromatin architecture of B cell development during the humoral immune response	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	107	BIGWIG BW MCOOL NARROWPEAK SF	Ashley Stephen Doane	Sep 09, 2021
GSE184471	Cell-type differential targeting of Setdb1 prevents aberrant CTCF binding, chromatin looping, and cis-regulatory interactions	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	44	BW HIC NARROWPEAK SRA Run Selector	Lut Fei Tam	Nov 01, 2023
GSE185255	Integration of 3D genome architecture and local chromatin features uncovers enhancers underlying craniofacial-specific cartilage defects	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	24	BED BEDGRAPH COOL NARROWPEAK SRA Run Selector	Qian Bian	Jan 04, 2023
GSE191146	Deeply hidden genome organization mediated by base-unpairing regions (BURs) directly bound by SATB1 linked to transcription	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	38	BW HIC NARROWPEAK	Terumi Kohwi-Shigematsu	Dec 28, 2021
GSE199934	Retinoid X receptor promotes hematopoietic stem cell fitness and quiescence by repressing MYC pathway activation [HISTONE_CnR]	Other	Mus musculus	8	NARROWPEAK	Mercedes Ricote	Nov 16, 2022
GSE199937	Retinoid X receptor promotes hematopoietic stem cell fitness and quiescence and preserves hematopoietic homeostasis	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	NARROWPEAK TXT	Mercedes Ricote	Nov 16, 2022
GSE200114	Dynamic promoter-enhancer contacts contribute to spatiotemporal gene expression during mouse fetal development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	70	BEDPE BIGWIG HIC NARROWPEAK	Ming Hu	Sep 02, 2024
GSE201655	An activity-specificity trade-off encoded in human transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	100	CSV MTX NARROWPEAK TAB TSV	Alexandre P Magalhaes	Feb 27, 2024
GSE203190	Tumor-induced double positive T cells display distinct lineage commitment mechanisms and functions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	49	CSV NARROWPEAK TXT	Bic MSKCC	May 20, 2022