GEO Browser - GEO

Series

Samples

Platforms

DataSets

122 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other			HIC
GSE169120	3D chromatin topography of LSK cells with hyperactivated Notch1 and/or Tcf7 knock-out [HiC-seq]	Other	Mus musculus	6	BEDPE HIC SRA Run Selector	Nadine Fournier	Jan 21, 2022
GSE137274	A WIZ/Cohesin/CTCF complex anchors DNA loops to define gene expression and cell identity [Hi-C]	Other	Mus musculus	4	BEDPE HIC TXT SRA Run Selector	Jill Dowen	Apr 14, 2020
GSE153574	A cohesin cancer mutation reveals a role for the hinge domain in genome organization and gene expression [Hi-C]	Other	Mus musculus	4	BEDPE HIC SRA Run Selector	Zachary Carico	Feb 23, 2021
GSE125972	A distal super enhancer mediates estrogen-dependent mouse uterine–specific gene transcription of Insulin-like growth factor 1 (Igf1)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	38	BIGWIG HIC TXT SRA Run Selector	Sylvia C Hewitt	May 08, 2019
GSE211904	A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	67	BW HIC TXT	Filippo M. RIJLI	Apr 27, 2023
GSE232490	A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	120	BEDGRAPH BW HIC TBI	Katia Georgopoulos	Nov 20, 2023
GSE231877	A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS [HiC_LpreB_Inducible_deletion]	Other	Mus musculus	4	HIC	Katia Georgopoulos	Nov 20, 2023
GSE231876	A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS [HiC_LpreB_Steadystate]	Other	Mus musculus	4	HIC	Katia Georgopoulos	Nov 20, 2023
GSE231879	A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS [HiChIP_LpreB steady state]	Other	Mus musculus	13	HIC	Katia Georgopoulos	Nov 20, 2023
GSE231880	A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS [HiChIP_LpreB_Inducible]	Other	Mus musculus	9	HIC	Katia Georgopoulos	Nov 20, 2023
GSE166177	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis [HiChIP]	Other	Mus musculus	6	BEDPE HIC TXT SRA Run Selector	Eneritz Agirre	Jan 28, 2022
GSE225860	Active maintenance of CD8+ T cell naïvety through regulation of global genome architecture [Hi-C]	Other	Mus musculus	15	BED HIC TSV	Monash Bioinformatics Platform	Apr 10, 2023
GSE233649	BL-HiC analysis of water avoidance stressed BALB/c mice colon epithelial cells	Other	Mus musculus	4	HIC TXT	Gen Zheng	Jul 10, 2023
GSE221519	BRWD1 orchestrates chromatin topology by converting static to dynamic cohesin complexes	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	46	BED BW HIC	Mark Maienschein-Cline	Aug 31, 2023
GSE221517	BRWD1 orchestrates chromatin topology by converting static to dynamic cohesin complexes (Hi-C)	Other	Mus musculus	6	HIC SRA Run Selector	Mark Maienschein-Cline	Aug 31, 2023
GSE212252	Balanced SET levels favor the correct enhancer repertoire during cell fate acquisition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio Homo sapiens Mus musculus	80	BROADPEAK HIC NARROWPEAK TAB	Luca Massimino	Sep 12, 2022
GSE144834	Balancing cohesin eviction and retention prevents aberrant chromosomal interactions, Polycomb-mediated repression, and X-inactivation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	94	BW HIC TXT SRA Run Selector	Andrea June Kriz	Mar 15, 2021
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus synthetic construct	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022
GSE157136	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters [Hi-C]	Other	Mus musculus	8	HIC SRA Run Selector	Danny Reinberg	Feb 06, 2022
GSE123670	CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	187	BED BW HIC	ya wei song	Apr 05, 2022