GEO Browser - GEO

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130 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other			HIC
GSE212252	Balanced SET levels favor the correct enhancer repertoire during cell fate acquisition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio Homo sapiens Mus musculus	80	BROADPEAK HIC NARROWPEAK TAB	Luca Massimino	Sep 12, 2022
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE185768	Promoter repression and 3D-restructuring resolves divergent developmental gene expression in TADs [Hi-C]	Other	Gallus gallus Monodelphis domestica Mus musculus	6	HIC SRA Run Selector	Michael I Robson	Sep 29, 2022
GSE185775	Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Gallus gallus Monodelphis domestica Mus musculus	88	BW HIC	Michael I Robson	Sep 29, 2022
GSE162511	Single-cell transcriptome and 3D genome atlas of the developing mouse brain	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	4314	HIC TXT	Longzhi Tan	Jan 07, 2021
GSE169121	Tcf1 is essential for initiation of oncogenic Notch1-driven chromatin topology.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	61	BEDGRAPH BEDPE HIC TXT	Nadine Fournier	Jan 21, 2022
GSE176066	NicE-C efficiently reveals open chromatin associated chromosome interactions at high resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	32	BW HIC SRA Run Selector	Zhengyu Luo	Jan 18, 2022
GSE211176	The hyperconnected 3D clique at the Ets1 locus is required for T cell function (Hi-C)	Other	Homo sapiens Mus musculus	5	HIC	Golnaz Vahedi	Jun 20, 2023
GSE211178	The hyperconnected 3D clique at the Ets1 locus is required for T cell function	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	67	BED HIC TSV	Golnaz Vahedi	Jun 20, 2023
GSE213597	ETV6 Represses Inflammatory Response Genes and Regulates HSPC Function During Stress Hematopoiesis in Mice	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BED BW HIC MTX TBI TSV	Kim Nichols	Aug 24, 2023
GSE214692	Dissecting developmental disorders caused by CTCF mutation at R567	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	71	BW CSV HIC MTX NARROWPEAK TSV	gongcheng Hu	May 05, 2024
GSE218274	PAX3-FOXO1 expression in endothelial progenitors dictates myogenic reprogramming and rhabdomyosarcoma identity	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	75	BED BW HIC TAR TDF TXT	Hongjian Jin	Sep 29, 2023
GSE232490	A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	120	BEDGRAPH BW HIC TBI	Katia Georgopoulos	Nov 20, 2023
GSE246859	ChromaFold predicts the 3D contact map from single-cell chromatin accessibility	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	3	HIC TSV	Christina Leslie	Aug 31, 2024
GSE266349	Remodeling of Il4-Il13-Il5 locus underlies selective gene expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	138	BED BW HIC	Hiroyuki Nagashima	Sep 25, 2024
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	BIGWIG BROADPEAK FPKM_TRACKING HIC NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE123653	CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming [BL-Hi-C]	Other	Mus musculus	40	HIC SRA Run Selector	ya wei song	Apr 05, 2022
GSE123670	CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	187	BED BW HIC	ya wei song	Apr 05, 2022
GSE125595	RNA interactions are essential for proper CTCF function	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	24	BW CLOUPE HIC TXT SRA Run Selector	Ricardo Saldana-Meyer	Sep 12, 2019
GSE125656	Exonuclease combinations reduce noises in 3D genomics technologies	Other Third-party reanalysis	Mus musculus	27	HIC TXT SRA Run Selector	Qing Li	Apr 08, 2020