GEO Browser - GEO

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130 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other			HIC
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	BIGWIG BROADPEAK FPKM_TRACKING HIC NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE123653	CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming [BL-Hi-C]	Other	Mus musculus	40	HIC SRA Run Selector	ya wei song	Apr 05, 2022
GSE123670	CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	187	BED BW HIC	ya wei song	Apr 05, 2022
GSE125595	RNA interactions are essential for proper CTCF function	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	24	BW CLOUPE HIC TXT SRA Run Selector	Ricardo Saldana-Meyer	Sep 12, 2019
GSE125656	Exonuclease combinations reduce noises in 3D genomics technologies	Other Third-party reanalysis	Mus musculus	27	HIC TXT SRA Run Selector	Qing Li	Apr 08, 2020
GSE125972	A distal super enhancer mediates estrogen-dependent mouse uterine–specific gene transcription of Insulin-like growth factor 1 (Igf1)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	38	BIGWIG HIC TXT SRA Run Selector	Sylvia C Hewitt	May 08, 2019
GSE126362	Pax3 cooperates with Ldb1 to direct local chromosome architecture during lineage specification	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	60	BED HIC SRA Run Selector	Alessandro Magli	Apr 16, 2019
GSE130723	H4K20me3 methyltransferase SUV420H2 shapes the chromatin landscape of pluripotent embryonic stem cells	Other	Mus musculus	6	HIC SRA Run Selector	Benjamin L Kidder	Nov 13, 2020
GSE130725	H4K20me3 methyltransferase SUV420H2 shapes the three-dimensional chromatin landscape of pluripotent embryonic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	26	BEDGRAPH HIC TXT	Benjamin L Kidder	Nov 13, 2020
GSE135465	Nucleome Dynamics during Retinal Development[Hi-C_Mm]	Other	Mus musculus	11	HIC SRA Run Selector	Beisi Xu	Sep 05, 2019
GSE137274	A WIZ/Cohesin/CTCF complex anchors DNA loops to define gene expression and cell identity [Hi-C]	Other	Mus musculus	4	BEDPE HIC TXT SRA Run Selector	Jill Dowen	Apr 14, 2020
GSE140363	Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	122	BED BEDGRAPH BROADPEAK BW CSV HIC NARROWPEAK SRA Run Selector	Nishana Mayilaadumveettil	Apr 14, 2020
GSE143293	Histone 1 deficiency drives lymphomagenesis through disruption of 3D chromatin architecture	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	53	HIC MTX TSV TXT SRA Run Selector	Matt Teater	Sep 02, 2020
GSE144834	Balancing cohesin eviction and retention prevents aberrant chromosomal interactions, Polycomb-mediated repression, and X-inactivation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	94	BW HIC TXT SRA Run Selector	Andrea June Kriz	Mar 15, 2021
GSE146397	Diploid chromatin conformation capture (Dip-C) of single cells from the developing mouse cortex and hippocampus	Other	Mus musculus	2544	BED HIC TXT SRA Run Selector	Longzhi Tan	Jan 07, 2021
GSE147843	ERa-binding super enhancers drive key mediators that convey uterine hormone responses	Other	Mus musculus	4	HIC TXT SRA Run Selector	Sylvia C Hewitt	Apr 29, 2020
GSE150384	DNA Double-Strand Breaks Induce H2Ax Phosphorylation Domains in a Contact-Dependent Manner	Other	Mus musculus	32	BW HIC SRA Run Selector	Patrick Leonard Collins	May 13, 2020
GSE153402	CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains [Hi-C and PLAC-seq]	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	HIC TXT SRA Run Selector	Bing Ren	Jul 06, 2020
GSE153403	CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	88	BW HIC TXT	Bing Ren	Jul 06, 2020