GEO Browser - GEO

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1512 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other
GSE186346	Extensive sex differences in depression-linked variants functionally assayed in mouse brain [Hippocampus]	Expression profiling by high throughput sequencing Other	Adeno-associated virus 9 Mus musculus	25	TXT SRA Run Selector	Joseph Dougherty	Feb 10, 2023
GSE186347	Extensive sex differences in depression-linked variants functionally assayed in mouse brain [P0&P10]	Expression profiling by high throughput sequencing Other	Adeno-associated virus 9 Mus musculus	44	TXT SRA Run Selector	Joseph Dougherty	Feb 10, 2023
GSE186348	Extensive sex differences in depression-linked variants functionally assayed in mouse brain	Expression profiling by high throughput sequencing Other	Adeno-associated virus 9 Mus musculus	69		Joseph Dougherty	Feb 10, 2023
GSE219068	mDRIP-seq: a high-throughput method for R-loop mapping and quantitative assessment	Other	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	356	BW	Changbin Sun	Jun 11, 2024
GSE219071	mDRIP-seq is a high-throughput method for quantitative R-loop landscape profiling	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	384	BW TXT	Changbin Sun	Jun 11, 2024
GSE249786	Mitochondrial RNA-seq and total RNA-seq of 293T, HeLa, and N2a cells; RIP-seq of SUPV3L1, ceSUPV3L1, ATP5B, and TRAP1; Small RNA-seq of 293T mitochondrial fractions	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Caenorhabditis elegans Homo sapiens Mus musculus	36	BW CSV TXT	Xu Liu	Dec 19, 2023
GSE200470	Divergent composition and transposon-silencing activity of small RNAs in mammalian oocytes	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Canis lupus familiaris Capra hircus Cavia porcellus Cricetulus griseus Danio rerio Homo sapiens Macaca fascicularis Mesocricetus auratus Mus musculus Oryctolagus cuniculus Rattus norvegicus Sus scrofa domesticus	138		Wei Liu	Mar 06, 2024
GSE205707	Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss	Other	Canis lupus familiaris Mus musculus	18	JSON RDS TIFF	Carlos Andres Aguilar	Feb 23, 2023
GSE222972	Epigenomic analysis of regulatory evolution in mole rats	Genome binding/occupancy profiling by high throughput sequencing Other	Cavia porcellus Fukomys damarensis Heterocephalus glaber Mus musculus	160	NARROWPEAK WIG	Diego Villar	Aug 21, 2023
GSE212252	Balanced SET levels favor the correct enhancer repertoire during cell fate acquisition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio Homo sapiens Mus musculus	80	BROADPEAK HIC NARROWPEAK TAB	Luca Massimino	Sep 12, 2022
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE166155	KARR-seq reveals principles of high-order ribonucleoprotein structure assembly	Other	Drosophila melanogaster Homo sapiens Mus musculus Respiratory syncytial virus Vesicular stomatitis virus	67	PAIRS SRA Run Selector	Youzhi Cheng	Dec 06, 2023
GSE202040	High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks [PRO-cap]	Other	Drosophila melanogaster Homo sapiens Mus musculus	11	BW	Maximilian Christian von der Linde	Jun 22, 2024
GSE202042	High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	78	BEDGRAPH BW	Maximilian Christian von der Linde	Jun 22, 2024
GSE223253	Autonomous transposons tune their sequences to ensure somatic suppression [FLASH]	Other	Drosophila melanogaster Homo sapiens Mus musculus	82	BW	IBRAHIM AVSAR ILIK	Jan 08, 2024
GSE223263	Autonomous transposons tune their sequences to ensure somatic suppression.	Other Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	153	BW TXT	IBRAHIM AVSAR ILIK	Jan 08, 2024
GSE228505	Hidden features of NAD-RNA epitranscriptome in Drosophila life cycle	Expression profiling by high throughput sequencing Other	Drosophila melanogaster Mus musculus	68	CSV	XUETING WANG	Dec 21, 2023
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE201064	Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination	Other	Escherichia coli Homo sapiens Mus musculus synthetic construct	83		Shun Liu	Oct 24, 2022
GSE211736	Joint epigenome profiling reveals cell-type-specific gene regulatory programs in human cortical organoids	Expression profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Mus musculus	27	BW FA PICKLE TAB TSV TXT SRA Run Selector	Boyan Bonev	Aug 23, 2023