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473 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Other			SRA Run Selector
GSE116329	Methylation of structured RNA by the m6A writer METTL16 is essential for mouse embryonic development	Expression profiling by high throughput sequencing Other	synthetic RNA Mus musculus	74	CSV SRA Run Selector	Ramesh Pillai	Sep 12, 2018
GSE112599	Genome-wide CRISPR-Cas9 interrogation of splicing networks reveals a mechanism for recognition of autism-misregulated neuronal microexons [CRISPR screen]	Other	synthetic construct Mus musculus	49	TAB XLSX SRA Run Selector	Ulrich Braunschweig	Oct 12, 2018
GSE115547	Determination of branch point (BP) usage by wild-type and mutant SF3B1 using a minigene library	Expression profiling by high throughput sequencing Other	synthetic construct Mus musculus Homo sapiens	7	TXT SRA Run Selector	MANOJ PILLAI	Oct 30, 2018
GSE145643	Functional characterization of thousands of type 2 diabetes-associated and chromatin-modulating variants under steady state and endoplasmic reticulum stress	Other	synthetic construct Mus musculus	9	FA TXT SRA Run Selector	Shubham Khetan	Feb 21, 2020
GSE159488	A versatile platform for locus-scale genome rewriting and verification	Other	synthetic construct Mus musculus Homo sapiens	44	BW SRA Run Selector	Mathew T Maurano	Jan 14, 2021
GSE161657	Identifying non-genetic determinants of malignant clonal fitness at single cell resolution (primary leukaemia barcode-seq)	Other	synthetic construct Mus musculus	14	FASTA TXT SRA Run Selector	Mark Dawson	Nov 08, 2021
GSE167352	Non-coding CRISPR interference screen to identify regulatory elements of Xist in TX1072 XX SP107 mESCs at the onset of random X inactivation	Other	synthetic construct Mus musculus	11	TXT SRA Run Selector	Till Schwämmle	Mar 04, 2021
GSE169020	MapToCleave: high-throughput profiling of microRNA biogenesis in living cells	Non-coding RNA profiling by high throughput sequencing Other	synthetic construct Mus musculus Homo sapiens	56	TXT SRA Run Selector	Wenjing Kang	Nov 16, 2021
GSE185666	Dual Chromatin Repressors Regulate Hippocampal Development	Expression profiling by high throughput sequencing Other	synthetic construct Mus musculus	2	MTX TSV SRA Run Selector	Kai-Chun Chang	Feb 01, 2022
GSE192435	CRISPR and biochemical screens Identify MAZ as a co-factor in CTCF-mediated insulation at Hox Clusters [CRISPR_set8]	Other	synthetic construct Mus musculus	13	TXT SRA Run Selector	Danny Reinberg	Feb 06, 2022
GSE178832	Multiplexed‌ ‌profiling‌ ‌facilitates‌ ‌robust‌ ‌m6A‌ ‌ quantification‌ ‌at‌ ‌site,‌ ‌gene‌ ‌and‌ ‌sample‌ ‌resolution	Other	Saccharomyces cerevisiae Mus musculus	210	BW SRA Run Selector	David Dierks	Jun 25, 2021
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus Homo sapiens Drosophila melanogaster	63	BED WIG SRA Run Selector	Amal Makrini	Apr 14, 2023
GSE111134	A compendium of conserved cleavage and polyadenylation events in mammalian genes	Other	Rattus norvegicus Mus musculus Homo sapiens	128	TXT SRA Run Selector	Bin Tian	Aug 08, 2018
GSE128122	The piRNA Response to Retroviral Invasion of the Koala Genome	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Phascolarctos cinereus Mus musculus	31	TXT SRA Run Selector	Tianxiong Yu	Oct 12, 2019
GSE111930	An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Pan troglodytes Mus musculus Macaca mulatta Homo sapiens Gorilla gorilla	60	BW HIC TDF TXT SRA Run Selector	Lei Tian	Aug 11, 2020
GSE135498	Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA	Other	Oryza sativa Neurospora crassa Nematostella vectensis Mus musculus Homo sapiens Capsaspora owczarzaki	40	BIGWIG BW TXT SRA Run Selector	Christopher Benner	Sep 16, 2019
GSE60034	Dynamic landscape of RNA structures in vivo reveals principles of post-transcriptional regulation [icSHAPE]	Other	Mus musculus	10	BW SRA Run Selector	Ryan Alexander Flynn	Mar 18, 2015
GSE60738	Dynamics of gene silencing during X inactivation using allele-specific RNA-Seq	Expression profiling by high throughput sequencing Other	Mus musculus	20	BED TXT WIG SRA Run Selector	Hendrik Marks	Jun 15, 2015
GSE63472	Drop-Seq analysis of P14 mouse retina single-cell suspension	Expression profiling by high throughput sequencing Other	Mus musculus	7	BAM TXT SRA Run Selector	Evan Macosko	May 20, 2015
GSE67955	The landscape of global-long range interactions in mouse and human blood cell lines mediated by Yy1, GATA1, and CTCF during differentiation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	18	BED TXT SRA Run Selector	Marissa Macchietto	Apr 30, 2019