Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA

Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution

G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4

Massively Parallel Reporter Assay for pluripotency factors in mESCs

Information Content Differentiates Enhancers From Silencers in Mouse Photoreceptors

An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates

High-throughput single-base resolution mapping of 2’-O-Methylated residues

RNA duplex map in living cells reveals higher order transcriptome structure

OmoMYC blunts promoter invasion by oncogenic MYC to inhibit gene expression characteristic of MYC-dependent tumors

Capturing pairwise and multi-way chromosomal conformations using C-walks

Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators

The energetics and physiological impact of cohesin extrusion

CAPTURE-3C-seq analysis of cis-element-mediated long-range DNA interactions

Episomal HBV persistence within transcribed host nuclear chromatin compartments involves HBx

A compendium of conserved cleavage and polyadenylation events in mammalian genes

Transcriptome Mapping of Internal N7-methylguanosine Methylome in Mammalian mRNA

Higher-order inter-chromosomal hubs shape 3-dimensional genome organization in the nucleus

HOXBLINC is aberrantly expressed in acute myeloid leukemia and functions as a potent oncogenic long non-coding RNA in leukemogenesis

Determination of branch point (BP) usage by wild-type and mutant SF3B1 using a minigene library

Single-molecule nascent RNA sequencing reveals regulatory domain architecture ant promoters and enhancers