GEO Browser - GEO

Series

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DataSets

46 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Other			NARROWPEAK
GSE168251	CTCF and transcription orchestrate chromatin structure re-configuration after mitosis	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	44	BW COOL NARROWPEAK	Yemin Lan	Jun 17, 2021
GSE150279	Using Mouse Embryonic Fibroblast to test the pioneer factor activity of POU4F3	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	16	NARROWPEAK SRA Run Selector	Neil Segil	Jul 09, 2021
GSE150386	ATACseq, CutnRun and RNAseq data from sensory progenitors and hair cells, from wild type and Pou4f3-mutant cochlea	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	30	NARROWPEAK TXT SRA Run Selector	Neil Segil	Jul 09, 2021
GSE150388	ATACseq, CutnRun and RNAseq data from Merkel cell and Touch dome epithelial progenitor cells, from wild type and Pou4f3-mutant epidermis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	14	NARROWPEAK TXT SRA Run Selector	Neil Segil	Jul 09, 2021
GSE150391	POU4F3 Pioneer Activity Enables ATOH1 to Drive Diverse Mechanoreceptor Differentiation Through a Feed-Forward Epigenetic Mechanism	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	68	NARROWPEAK TXT	Neil Segil	Jul 09, 2021
GSE149420	UTX condensation underlies its tumor suppressive activity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	78	BEDPE NARROWPEAK TXT SRA Run Selector	Bi Shi	Jul 15, 2021
GSE165495	Mesomelic Dysplasias Associated With The HOXD Locus Are Caused By Regulatory Reallocations	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	23	BW COOL NARROWPEAK TAR TXT	Lucille Lopez-Delisle	Jul 20, 2021
GSE181387	Cumulative in-cis mutagenesis in vivo reveals various functions for CTCF sites at the mouse Hoxd cluster	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	86	BW COOL NARROWPEAK TXT	Lucille Lopez-Delisle	Oct 05, 2021
GSE194018	A role for the GATA transcription factor family in X-chromosome inactivation as direct potent Xist activators	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Synthetic plasmid	39	BW NARROWPEAK	Till Schwämmle	Jan 26, 2022
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus synthetic construct	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022
GSE144716	Gene regulation by gonadal hormone receptors defines brain sex differences-[CUT&RUN]	Other	Homo sapiens Mus musculus	34	BW NARROWPEAK SRA Run Selector	Melody Wu	Apr 20, 2022
GSE144718	Gene regulation by gonadal hormone receptors defines brain sex differences	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	95	BW NARROWPEAK TSV	Melody Wu	Apr 20, 2022
GSE194114	Context-dependent enhancer function revealed by targeted inter-TAD relocation	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	34	BED BW COOL NARROWPEAK TXT	Lucille Lopez-Delisle	May 17, 2022
GSE195592	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Mus musculus	46	BED BEDGRAPH BIGWIG BW COOL NARROWPEAK TXT	Aurelie Hintermann	Jun 20, 2022
GSE166426	Histone H1 regulates non-coding RNA turnover on chromatin in a m6A-dependent manner	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	32	BED BW NARROWPEAK SRA Run Selector	Maria Gomez	Sep 13, 2022
GSE205783	Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	170	BEDGRAPH BIGWIG COOL NARROWPEAK TXT	Lucille Lopez-Delisle	Apr 28, 2023
GSE237974	A novel CRISPR/Cas9 screening platform identifies an IRF1-SOCS1-mediated negative feedback loop that limits CXCL9 expression and anti-tumor immunity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	56	NARROWPEAK	Kevin C sek	Jul 22, 2023
GSE211214	Identifying gene combinations for targeting innate immune cells to enhance T cells activation	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	81	BW NARROWPEAK TAR	Oren Parnas	Sep 13, 2023
GSE243851	Nuclear Organization of Lens Epithelium and Fiber Cells in Newborn Lens	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED BEDGRAPH BEDPE BW HIC NARROWPEAK	William Chang	Oct 16, 2023
GSE184471	Cell-type differential targeting of Setdb1 prevents aberrant CTCF binding, chromatin looping, and cis-regulatory interactions	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	44	BW HIC NARROWPEAK SRA Run Selector	Lut Fei Tam	Nov 01, 2023