GEO Browser - GEO

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46 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Other			HIC
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE110898	Enhancer remodeling overcomes therapeutic resistance driven by epigenetic evolution in cancer [HiChIP]	Other	Mus musculus	2	HIC SRA Run Selector	Mark Dawson	May 21, 2019
GSE110901	Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	86	HIC NARROWPEAK	Mark Dawson	May 21, 2019
GSE111930	An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gorilla gorilla Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	60	BW HIC TDF TXT SRA Run Selector	Lei Tian	Aug 11, 2020
GSE112222	BAZ2A safeguards genome architecture of ground-state pluripotent stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	49	BED BW CSV HIC SRA Run Selector	Raffaella Santoro	Oct 20, 2020
GSE112717	Enhancer-dependence of gene expression increases with developmental age	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	39	BED BW HIC TXT SRA Run Selector	Jialiang Huang	Aug 19, 2020
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	BIGWIG BROADPEAK FPKM_TRACKING HIC NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE121671	Tet inactivation disrupts YY1 binding and long-range chromatin interactions to cause developmental defects in embryonic heart	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	23	BW HIC TXT SRA Run Selector	Jia Li	Aug 07, 2019
GSE125972	A distal super enhancer mediates estrogen-dependent mouse uterine–specific gene transcription of Insulin-like growth factor 1 (Igf1)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	38	BIGWIG HIC TXT SRA Run Selector	Sylvia C Hewitt	May 08, 2019
GSE127995	Sensory experience remodels genome architecture in neural circuit to drive motor learning	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	154	BIGWIG HIC SRA Run Selector	Yue Yang	May 09, 2019
GSE132057	Genome-wide profiles of chromatin interaction in mouse nephron progenitor cells [HiC]	Other	Mus musculus	6	BEDPE HIC SRA Run Selector	Andrew P McMahon	Jan 07, 2021
GSE138102	G9a plays distinct roles in maintaining DNA methylation, retrotransposon silencing and chromatin looping	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	130	BW HIC TSV SRA Run Selector	Qinghong Jiang	Oct 26, 2020
GSE138822	The chromatin remodeling enzyme Chd4 regulates genome architecture in the mouse brain	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	38	BED BEDPE BIGWIG CSV HIC TXT SRA Run Selector	Jared V Goodman	Apr 13, 2020
GSE144712	ZNF143 mediates CTCF-bound promoter-enhancer loops required for murine hematopoietic stem and progenitor cell function	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	25	BW HIC TXT SRA Run Selector	Qi-Ling Zhou	Oct 22, 2020
GSE145472	Altered 3D chromatin structure permits inversional recombination at the IgH locus (Capture Hi-C)	Other	Mus musculus	4	HIC SRA Run Selector	Xiang Qiu	Jul 01, 2020
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus synthetic construct	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022
GSE160449	Transcriptional and epigenomic profiling identifies YAP signaling as a key regulator of intestinal epithelium maturation [I]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	14	BW HIC TXT SRA Run Selector	Laura Maarit Pikkupeura	Jul 13, 2023
GSE163729	BRD2 regulates accessible genome organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	97	BW HIC MCOOL XLSX SRA Run Selector	Robert Tjian	Feb 09, 2022
GSE169121	Tcf1 is essential for initiation of oncogenic Notch1-driven chromatin topology.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	61	BEDGRAPH BEDPE HIC TXT	Nadine Fournier	Jan 21, 2022