GEO Browser - GEO

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23 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Other			COOL
GSE98671	Targeted degradation of CTCF decouples local insulation of chromosome domains from genomic compartmentalization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	102	BED BW COOL FASTA TXT SRA Run Selector	Elphege Nora	May 25, 2017
GSE156868	Molecular basis of CTCF binding polarity in genome folding	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	161	BED COOL FASTA TXT SRA Run Selector	Elphege Nora	Aug 30, 2020
GSE165491	Mesomelic Dysplasias Associated With The HOXD Locus Are Caused By Regulatory Reallocations [cHi-C]	Other	Mus musculus	6	COOL TXT SRA Run Selector	Lucille Lopez-Delisle	Jul 20, 2021
GSE165495	Mesomelic Dysplasias Associated With The HOXD Locus Are Caused By Regulatory Reallocations	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	23	BW COOL NARROWPEAK TAR TXT	Lucille Lopez-Delisle	Jul 20, 2021
GSE168176	CTCF and transcription orchestrate chromatin structure re-configuration after mitosis [Hi-C]	Other	Mus musculus	22	COOL CSV SRA Run Selector	Yemin Lan	Jun 17, 2021
GSE168251	CTCF and transcription orchestrate chromatin structure re-configuration after mitosis	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	44	BW COOL NARROWPEAK	Yemin Lan	Jun 17, 2021
GSE171159	Ovulation suppression protects against chromosomal abnormalities in mouse eggs at advanced maternal age	Other	Mus musculus	126	COOL SRA Run Selector	Bart Johan H Dequeker	Jul 27, 2021
GSE181386	Cumulative in-cis mutagenesis in vivo reveals various functions for CTCF sites at the mouse Hoxd cluster [cHi-C]	Other	Mus musculus	16	COOL TXT SRA Run Selector	Lucille Lopez-Delisle	Oct 05, 2021
GSE181387	Cumulative in-cis mutagenesis in vivo reveals various functions for CTCF sites at the mouse Hoxd cluster	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	86	BW COOL NARROWPEAK TXT	Lucille Lopez-Delisle	Oct 05, 2021
GSE194112	Context-dependent enhancer function revealed by targeted inter-TAD relocation [CHi-C]	Other	Mus musculus	4	COOL TXT	Lucille Lopez-Delisle	May 17, 2022
GSE194114	Context-dependent enhancer function revealed by targeted inter-TAD relocation	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	34	BED BW COOL NARROWPEAK TXT	Lucille Lopez-Delisle	May 17, 2022
GSE195592	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Mus musculus	46	BED BEDGRAPH BIGWIG BW COOL NARROWPEAK TXT	Aurelie Hintermann	Jun 20, 2022
GSE197231	Cohesin and CTCF control chromosomal contact dynamics in living cells [Hi-C]	Other	Mus musculus	3	COOL	Luca Giorgetti	Feb 27, 2022
GSE197238	Cohesin and CTCF control chromosomal contact dynamics in living cells	Other	Mus musculus	17	BW COOL MATRIX	Luca Giorgetti	Feb 27, 2022
GSE205778	Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos [cHi-C]	Other	Mus musculus	20	COOL TXT	Lucille Lopez-Delisle	Apr 28, 2023
GSE205780	Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos [HiChIP]	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	1	COOL	Lucille Lopez-Delisle	Apr 28, 2023
GSE205783	Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	170	BEDGRAPH BIGWIG COOL NARROWPEAK TXT	Lucille Lopez-Delisle	Apr 28, 2023
GSE208298	Prmt5-dependent regulation of gene expression and TAD boundary strength during early adipogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	20	BW COOL	Sabriya Syed	Sep 08, 2023
GSE228395	Selective compartmentalization in condensin-depleted mitotic chromosomes [HiC-C]	Other	Mus musculus	14	COOL HIC	Haoyue Zhang	Nov 22, 2023
GSE228402	Selective compartmentalization in condensin-depleted mitotic chromosomes	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	146	BW COOL HIC	Haoyue Zhang	Nov 22, 2023